View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18957_high_19 (Length: 271)
Name: NF18957_high_19
Description: NF18957
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18957_high_19 |
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Alignment Details
Target: chr1 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 262
Target Start/End: Complemental strand, 33530308 - 33530047
Alignment:
| Q |
1 |
ttggtcctgagactcttcagactcatgttcctggtcaacagacttgataaagaatcatctctccctcactcagttgtcttcgcctatcgatccattagtt |
100 |
Q |
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| T |
33530308 |
ttggtcctgagactcttcagactcatgttcttggtcaacatacttgataaagaatcatctctccctcactcagttgtcttcgcctatcgatccattagtt |
33530209 |
T |
|
| Q |
101 |
cggatgatactcgtctaacacttaattatctatctctcgatgtcagctaatatggtaattacttttggtgtaaacaagtacatataataatctcagtttt |
200 |
Q |
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||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33530208 |
gggaggatacttgtctaacacttaattatctatctctcgatgtcagctaatatggtaattacttttggtgtaaacaagtacatataataatctcagtttt |
33530109 |
T |
|
| Q |
201 |
ttcttaatgacaattttatttgtacaaaccaaaatattactccatttgttccttgatatttt |
262 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33530108 |
ttcttaatgacaattttatttgtacaaaccaaaatattactccatttgttccttgatatttt |
33530047 |
T |
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