View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18957_high_2 (Length: 570)

Name: NF18957_high_2
Description: NF18957
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18957_high_2
NF18957_high_2
[»] chr1 (5 HSPs)
chr1 (196-555)||(49611747-49612105)
chr1 (10-198)||(49612128-49612315)
chr1 (279-317)||(52135597-52135635)
chr1 (285-317)||(1902124-1902156)
chr1 (10-65)||(49607134-49607189)
[»] chr3 (1 HSPs)
chr3 (361-463)||(5637712-5637814)
[»] chr4 (1 HSPs)
chr4 (279-317)||(42776700-42776738)
[»] chr2 (1 HSPs)
chr2 (196-265)||(8094661-8094730)
[»] chr8 (1 HSPs)
chr8 (192-260)||(1048086-1048153)
[»] chr7 (1 HSPs)
chr7 (285-317)||(45967010-45967042)


Alignment Details
Target: chr1 (Bit Score: 289; Significance: 1e-162; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 196 - 555
Target Start/End: Complemental strand, 49612105 - 49611747
Alignment:
Q  196 gtttttagttctcataaaaaagttgacatgttttagttgctataaaagttttaagtacgtagttttagtcttttttaaagactttcttcaaattatcatc 295  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||    
T  49612105 gtttttagttctcgtaaaaaagttgacatgttttagttgctataaaagttttcagtatgtagttttagtcttttttaaagactttcttcaaattatcatc 49612006  T
Q  296 caaacaataaaatttacctaaactttaaacttcttaaaaagttacattattattaannnnnnnnnaagaaggtaaaatgaaattatatcatcaaagggcc 395  Q
    |||||||||||||||||||||| |||||| |||||||||||||||||||||||            |||||||||||||||||||||||||| ||||||||    
T  49612005 caaacaataaaatttacctaaaatttaaatttcttaaaaagttacattattatatttttttttttaagaaggtaaaatgaaattatatcat-aaagggcc 49611907  T
Q  396 aaaaacttcctagcagaaggtgtgtcaggaagagaaggcaaattcaaggtgttacaaagtctaagcaatggaactagcaaaaaggaaaaacaaattaaag 495  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49611906 aaaaacttcctagcagaaggtgtgtcaggaagagaaggctaattcaaggtgttacaaagtctaagcaatggaactagcaaaaaggaaaaacaaattaaag 49611807  T
Q  496 ttatagatcccaaacacaaaaatgtgttaaaccacatgaatggtaatcgaaagagagagt 555  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49611806 ttatagatcccaaacacaaaaatgtgttaaaccacatgaatggtaatcgaaagagagagt 49611747  T

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Target: chr1; HSP #2
Raw Score: 177; E-Value: 4e-95
Query Start/End: Original strand, 10 - 198
Target Start/End: Complemental strand, 49612315 - 49612128
Alignment:
Q  10 gcagagaaaacgaaatgctcaaggaaaggatgttacaattgaaacatggaagacttctgtataaaggatgttggtaaagatgatgtaattcgaaggaagg 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49612315 gcagagaaaacgaaatgctcaaggaaaggatgttacaattgaaacatggaagacttctgtataaaggatgttggtaaagatgatgtaattcgaaggaagg 49612216  T
Q  110 agaaaatgtctaggaggtttcccaatttctaaatagtaaatataatattctttttgacaataaaataaagggttaaataagtttttgtt 198  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||    
T  49612215 agaaaatgtctaggaggtttcccaatttctaaatagtaaatataatattc-ttttgacaataaaataaagggttaaataaatttttgtt 49612128  T

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Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 279 - 317
Target Start/End: Original strand, 52135597 - 52135635
Alignment:
Q  279 ttcttcaaattatcatccaaacaataaaatttacctaaa 317  Q
    |||||||||||||||||||||||||||||||||||||||    
T  52135597 ttcttcaaattatcatccaaacaataaaatttacctaaa 52135635  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 285 - 317
Target Start/End: Complemental strand, 1902156 - 1902124
Alignment:
Q  285 aaattatcatccaaacaataaaatttacctaaa 317  Q
    |||||||||||||||||||||||||||||||||    
T  1902156 aaattatcatccaaacaataaaatttacctaaa 1902124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 10 - 65
Target Start/End: Complemental strand, 49607189 - 49607134
Alignment:
Q  10 gcagagaaaacgaaatgctcaaggaaaggatgttacaattgaaacatggaagactt 65  Q
    ||||||||| |||| |||||||| ||||||||||  |||||||||||| |||||||    
T  49607189 gcagagaaagcgaagtgctcaagcaaaggatgttgtaattgaaacatgaaagactt 49607134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 361 - 463
Target Start/End: Original strand, 5637712 - 5637814
Alignment:
Q  361 aagaaggtaaaatgaaattatatcatcaaagggccaaaaacttcctagcagaaggtgtgtcaggaagagaaggcaaattcaaggtgttacaaagtctaag 460  Q
    |||||| |||||||||||||||| | |||| ||||||||||||||||||| |||| |||| || ||||||| || || ||||   ||||| |||||||||    
T  5637712 aagaagttaaaatgaaattatattaacaaatggccaaaaacttcctagcacaaggcgtgttagaaagagaaagctaagtcaaaaggttaccaagtctaag 5637811  T
Q  461 caa 463  Q
    |||    
T  5637812 caa 5637814  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 279 - 317
Target Start/End: Complemental strand, 42776738 - 42776700
Alignment:
Q  279 ttcttcaaattatcatccaaacaataaaatttacctaaa 317  Q
    ||||||||||||||||||||||||| ||||| |||||||    
T  42776738 ttcttcaaattatcatccaaacaatgaaattcacctaaa 42776700  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 196 - 265
Target Start/End: Original strand, 8094661 - 8094730
Alignment:
Q  196 gtttttagttctcataaaaaagttgacatgttttagttgctataaaagttttaagtacgtagttttagtc 265  Q
    ||||||||| ||||||||||| |||||||||||| ||  ||||||||  ||| || | ||||||||||||    
T  8094661 gtttttagtcctcataaaaaaattgacatgttttggtccctataaaaaatttcagcatgtagttttagtc 8094730  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 192 - 260
Target Start/End: Original strand, 1048086 - 1048153
Alignment:
Q  192 ttttgtttttagttctcataaaaaagttgacatgttttagttgctataaaagttttaagtacgtagttt 260  Q
    ||||||||||||| | |||||||||| ||||||||||| ||| ||||||||  ||| || |||||||||    
T  1048086 ttttgtttttagtccgcataaaaaag-tgacatgttttggttcctataaaaaatttcagcacgtagttt 1048153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 285 - 317
Target Start/End: Complemental strand, 45967042 - 45967010
Alignment:
Q  285 aaattatcatccaaacaataaaatttacctaaa 317  Q
    ||||||||||||||||||||||||| |||||||    
T  45967042 aaattatcatccaaacaataaaattcacctaaa 45967010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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