View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18957_high_21 (Length: 260)
Name: NF18957_high_21
Description: NF18957
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18957_high_21 |
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Alignment Details
Target: chr4 (Bit Score: 151; Significance: 5e-80; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 95 - 253
Target Start/End: Complemental strand, 30767897 - 30767739
Alignment:
| Q |
95 |
ttttttgagaaccaatatcatagaattgagaattggaacaatgaaacaaccaatgattatataaagaaagttggattcatggtaaactcacagtcatttc |
194 |
Q |
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| T |
30767897 |
ttttttgagaaccaatatcatagaattgagaattggaacaatgaaacaaccaatgattatataaagaaagttggattcatggtaaactcacagtcatttc |
30767798 |
T |
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| Q |
195 |
taggccaaggttccggttcagaatactctccaaacgagacccttcagtcatattcttcg |
253 |
Q |
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| T |
30767797 |
taggccaaggttccggttcagaatactctccaaacgagacccttcagtcaaatttttcg |
30767739 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 50
Target Start/End: Complemental strand, 30767974 - 30767942
Alignment:
| Q |
18 |
gtttcattccatggcaatcgcaacaagtatgtg |
50 |
Q |
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| T |
30767974 |
gtttcattccatggcaatcacaacaagtatgtg |
30767942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 97 - 207
Target Start/End: Complemental strand, 5053580 - 5053472
Alignment:
| Q |
97 |
ttttgagaaccaatatcatagaattgagaattggaacaatgaaacaaccaatgattatataaagaaagttggattcatggtaaactcacagtcatttcta |
196 |
Q |
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| T |
5053580 |
ttttgagagccaatataagagaattgtgaaatggagcagtgaaacaaccactgattatataaagaaagttggattcatggtaaact--cggtcatttcta |
5053483 |
T |
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| Q |
197 |
ggccaaggttc |
207 |
Q |
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| T |
5053482 |
ggtcaaggttc |
5053472 |
T |
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