View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18957_high_22 (Length: 251)
Name: NF18957_high_22
Description: NF18957
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18957_high_22 |
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Alignment Details
Target: chr5 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 278514 - 278756
Alignment:
| Q |
1 |
gttttttatttcttctttccaactgatatgcatttccttttccatcacggtttatggtttggattttgattttctgaaattttccgtgtcatttgatatt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| |||||||||||||| |
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| T |
278514 |
gttttttatttcttctttccaactgatatgcatttccttttccaccacggtttatggtttggattttgattttctgaaattctccttgtcatttgatatt |
278613 |
T |
|
| Q |
101 |
ataggtcccaaagaacaagaggaatgttaaatgtaggaagatgattaggtgtgcttctataagcactgaagagaatacaagtactggttctcaggatcag |
200 |
Q |
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| T |
278614 |
ataggtcccaaagaacaagaggaatgttaaatgtaggaagatgattaggtgtgcttctataagcactgaagagaatacaagtactggttctcaggatcag |
278713 |
T |
|
| Q |
201 |
aacttaagcggttattgttcagaggatgagtccaattcttctc |
243 |
Q |
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| T |
278714 |
accttaagcggttattgttcagaggatgagtccaattcttctc |
278756 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 69; Significance: 5e-31; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 92 - 240
Target Start/End: Complemental strand, 24653551 - 24653403
Alignment:
| Q |
92 |
tttgatattataggtcccaaagaacaagaggaatgttaaatgtaggaagatgattaggtgtgcttctataagcactgaagagaatacaagtactggttct |
191 |
Q |
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| T |
24653551 |
tttgattttataggtccgaaagaaagagaggaatgttaaatgtaggaagaacatgagatgtggttctgtaagcacttgagagaatacaagtcctggttct |
24653452 |
T |
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| Q |
192 |
caggatcagaacttaagcggttattgttcagaggatgagtccaattctt |
240 |
Q |
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| T |
24653451 |
caggatcagaccttaagcaattgttgttcagataatgaatccaattctt |
24653403 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 91 - 209
Target Start/End: Complemental strand, 24685277 - 24685159
Alignment:
| Q |
91 |
atttgatattataggtcccaaagaacaagaggaatgttaaatgtaggaagatgattaggtgtgcttctataagcactgaagagaatacaagtactggttc |
190 |
Q |
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||||||| ||||||||||| ||||||||||||||||||||||| | ||||| || || |||| || ||||||||| |||||||||||| || ||||||| |
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| T |
24685277 |
atttgattttataggtccccaagaacaagaggaatgttaaatgcatgaagaatatgagatgtggttttataagcacagaagagaatacaggtcctggttc |
24685178 |
T |
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| Q |
191 |
tcaggatcagaacttaagc |
209 |
Q |
| |
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||| ||||||| ||||||| |
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| T |
24685177 |
tcaagatcagaccttaagc |
24685159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 92 - 201
Target Start/End: Complemental strand, 24682535 - 24682423
Alignment:
| Q |
92 |
tttgatattataggtcccaaagaacaagaggaat---gttaaatgtaggaagatgattaggtgtgcttctataagcactgaagagaatacaagtactggt |
188 |
Q |
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|||||| |||||||||| |||||| |||||||| |||||||||||||||| || || |||| |||| |||||||| |||||||||||||| ||||| |
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| T |
24682535 |
tttgattttataggtccgaaagaaagagaggaataatgttaaatgtaggaagaacatgagatgtggttctgtaagcacttaagagaatacaagtgctggt |
24682436 |
T |
|
| Q |
189 |
tctcaggatcaga |
201 |
Q |
| |
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||||||||||||| |
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| T |
24682435 |
tctcaggatcaga |
24682423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 9 - 208
Target Start/End: Complemental strand, 24631957 - 24631760
Alignment:
| Q |
9 |
tttcttct-ttccaactgatatgcatttccttttccatcacggtttatggtttggattttgattttctgaaattttccgtgtcatttgatattataggtc |
107 |
Q |
| |
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|||||||| |||||| ||||||| ||||| ||||||| ||| |||||||| || ||| |||||| ||| ||| ||| || ||||||| |||| ||| |
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| T |
24631957 |
tttcttctcttccaagtgatatggatttctttttccaacacaatttatggtctgt-tttcgattttgtgagattatcccggttatttgattttattagtc |
24631859 |
T |
|
| Q |
108 |
ccaaagaacaagaggaatgttaaatgtaggaagatgattaggtgtgcttctataagcactgaagagaatacaagtactggttctcaggatcagaacttaa |
207 |
Q |
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| T |
24631858 |
ccaaagaacaagaggaa--ttaaatgtatgaagaatatgagatttggttctataatcacaaaagaaaatacaagtcctggttcgccggatcagaccttaa |
24631761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 49; Significance: 4e-19; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 28 - 200
Target Start/End: Complemental strand, 41806256 - 41806086
Alignment:
| Q |
28 |
atgcatttccttttccatcacggtttatggtttggattttgattttctgaaattttccgtgtcatttgatattataggtcccaaagaacaagaggaatgt |
127 |
Q |
| |
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|||||||||||||||| || |||||||||||| ||| |||||| ||| ||| ||| ||| ||||||| ||||||||||| ||||||||| ||||| |
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| T |
41806256 |
atgcatttccttttcctgcaaagtttatggtttgtgttt-gattttgtgagattctccttgttatttgattttataggtcccgcggaacaagag-aatgt |
41806159 |
T |
|
| Q |
128 |
taaatgtaggaagatgattaggtgtgcttctataagcactgaagagaatacaagtactggttctcaggatcag |
200 |
Q |
| |
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||| ||||| |||| | || | ||||||||||||||||||||||||||| || ||||||||||| ||||| |
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| T |
41806158 |
taactgtagaaagaatgtaagacgggcttctataagcactgaagagaatacacgtcctggttctcagcatcag |
41806086 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 150 - 201
Target Start/End: Complemental strand, 41800031 - 41799980
Alignment:
| Q |
150 |
tgtgcttctataagcactgaagagaatacaagtactggttctcaggatcaga |
201 |
Q |
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| T |
41800031 |
tgtgcttctataagcactgaagaaaatacaagtcctggttctcaggatcaga |
41799980 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 24 - 127
Target Start/End: Complemental strand, 41800138 - 41800036
Alignment:
| Q |
24 |
tgatatgcatttccttttccatcacggtttatggtttggattttgattttctgaaattttccgtgtcatttgatattataggtcccaaagaacaagagga |
123 |
Q |
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|||| ||||||||||||||| ||| |||||||||||| ||| |||||| | | ||| ||| || ||||||| ||||||||||| ||||||||| ||| |
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| T |
41800138 |
tgatgtgcatttccttttcctgcacagtttatggtttgtgttt-gattttgttagattctcctggttatttgattttataggtcccgaagaacaagggga |
41800040 |
T |
|
| Q |
124 |
atgt |
127 |
Q |
| |
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|||| |
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|
| T |
41800039 |
atgt |
41800036 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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