View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18957_high_3 (Length: 491)
Name: NF18957_high_3
Description: NF18957
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18957_high_3 |
 | |
|
| [»] scaffold0016 (2 HSPs) |
| | |
|
| [»] scaffold0642 (3 HSPs) |
| | |
|
| [»] scaffold0345 (3 HSPs) |
| | |
|
| [»] scaffold0105 (3 HSPs) |
| | |
|
| [»] scaffold1526 (2 HSPs) |
| | |
|
Alignment Details
Target: scaffold0016 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 232 - 476
Target Start/End: Complemental strand, 51290 - 51046
Alignment:
| Q |
232 |
ttcttttatgcccatcacatagaggatatagtataataccaccctacgaccaaaaggaaactcataaaaggatgatctttagtttaaagctaaagagatg |
331 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51290 |
ttcttttatgcccatcacatagaggatatagtataataccaccctacgaccaaaaggaaactcataaaaggatgatctttagtttaaagctaaagagatg |
51191 |
T |
|
| Q |
332 |
gnnnnnnntgtattcaacccaattagggggcgaagaagtgttaaagggtctaaaatgtcaagactgtgggaaccaagcaaagaaggattgtgcatactca |
431 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51190 |
gaaaaaaatgtattcaacccaattagggggcgaagaagtgttaaagagtctaaaatgtcaagactgtgggaaccaagcaaagaaggattgtgcatactca |
51091 |
T |
|
| Q |
432 |
aggtgcagaagttgctgcaaaaacaaagattttaactgccataca |
476 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51090 |
aggtgcagaagttgctgcaaaaacaaagattttaactgccataca |
51046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 8 - 236
Target Start/End: Complemental strand, 54039 - 53813
Alignment:
| Q |
8 |
tgagatgaaattgaatattactaagtcttagtaaatgagtactgaccaaattaccaaagaggatcaaaacatttaagataggaataatttgtggctgatg |
107 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54039 |
tgagatgaaattgaatatta--aagtcttagtaaatgagtactgacaaaattaccaaagaggatcaaaacatttaagataggaataatttgtggctgatg |
53942 |
T |
|
| Q |
108 |
atgttgctcctaatagtgatacaatacttactttctctctaacatcattccaatccggtccttcttctctcacactctattcatacccatccatgaattc |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53941 |
atgttgctcctaatagtgatacaatacttactttctctctaacatcattccaatccggtccttcttctctcacactctattcatacccatccatgaattc |
53842 |
T |
|
| Q |
208 |
actctagagcggtgagtggcttcgttctt |
236 |
Q |
| |
|
|||| |||||||||||||||||||||||| |
|
|
| T |
53841 |
actccagagcggtgagtggcttcgttctt |
53813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0642 (Bit Score: 199; Significance: 1e-108; HSPs: 3)
Name: scaffold0642
Description:
Target: scaffold0642; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 232 - 476
Target Start/End: Original strand, 6663 - 6905
Alignment:
| Q |
232 |
ttcttttatgcccatcacatagaggatatagtataataccaccctacgaccaaaaggaaactcataaaaggatgatctttagtttaaa-gctaaagagat |
330 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
6663 |
ttcttttatgcccatcacatagaggatatagtataataccaccctacgaccaaaaggaaactcataaaaggatgatctttagtttaaaagctaaagagat |
6762 |
T |
|
| Q |
331 |
ggnnnnnnntgtattcaacccaattagggggcgaagaagtgttaaagggtctaaaatgtcaagactgtgggaaccaagcaaagaaggattgtgcatactc |
430 |
Q |
| |
|
|| |||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6763 |
ggaaaaaaatgtattcaacccaattaggggg---agaagtgttaaagggtctaaaatgttaagactgtgggaaccaagcaaagaaggattgtgcatactc |
6859 |
T |
|
| Q |
431 |
aaggtgcagaagttgctgcaaaaacaaagattttaactgccataca |
476 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6860 |
aaggtgcagaagttgctgcaaaaacaaagattttaactgccataca |
6905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0642; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 134 - 197
Target Start/End: Original strand, 4102 - 4165
Alignment:
| Q |
134 |
cttactttctctctaacatcattccaatccggtccttcttctctcacactctattcatacccat |
197 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
4102 |
cttactttctctctaacatcattccaatccggttcttcttctctcacactctattcatacccat |
4165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0642; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 192 - 236
Target Start/End: Original strand, 4184 - 4228
Alignment:
| Q |
192 |
acccatccatgaattcactctagagcggtgagtggcttcgttctt |
236 |
Q |
| |
|
|||||||||||||||||||| ||| |||||||||||||||||||| |
|
|
| T |
4184 |
acccatccatgaattcactccagatcggtgagtggcttcgttctt |
4228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0345 (Bit Score: 199; Significance: 1e-108; HSPs: 3)
Name: scaffold0345
Description:
Target: scaffold0345; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 232 - 476
Target Start/End: Original strand, 16576 - 16818
Alignment:
| Q |
232 |
ttcttttatgcccatcacatagaggatatagtataataccaccctacgaccaaaaggaaactcataaaaggatgatctttagtttaaa-gctaaagagat |
330 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
16576 |
ttcttttatgcccatcacatagaggatatagtataataccaccctacgaccaaaaggaaactcataaaaggatgatctttagtttaaaagctaaagagat |
16675 |
T |
|
| Q |
331 |
ggnnnnnnntgtattcaacccaattagggggcgaagaagtgttaaagggtctaaaatgtcaagactgtgggaaccaagcaaagaaggattgtgcatactc |
430 |
Q |
| |
|
|| |||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16676 |
ggaaaaaaatgtattcaacccaattaggggg---agaagtgttaaagggtctaaaatgttaagactgtgggaaccaagcaaagaaggattgtgcatactc |
16772 |
T |
|
| Q |
431 |
aaggtgcagaagttgctgcaaaaacaaagattttaactgccataca |
476 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16773 |
aaggtgcagaagttgctgcaaaaacaaagattttaactgccataca |
16818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0345; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 134 - 197
Target Start/End: Original strand, 14014 - 14077
Alignment:
| Q |
134 |
cttactttctctctaacatcattccaatccggtccttcttctctcacactctattcatacccat |
197 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
14014 |
cttactttctctctaacatcattccaatccggttcttcttctctcacactctattcatacccat |
14077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0345; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 192 - 236
Target Start/End: Original strand, 14096 - 14140
Alignment:
| Q |
192 |
acccatccatgaattcactctagagcggtgagtggcttcgttctt |
236 |
Q |
| |
|
|||||||||||||||||||| ||| |||||||||||||||||||| |
|
|
| T |
14096 |
acccatccatgaattcactccagatcggtgagtggcttcgttctt |
14140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0105 (Bit Score: 199; Significance: 1e-108; HSPs: 3)
Name: scaffold0105
Description:
Target: scaffold0105; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 232 - 476
Target Start/End: Complemental strand, 22406 - 22164
Alignment:
| Q |
232 |
ttcttttatgcccatcacatagaggatatagtataataccaccctacgaccaaaaggaaactcataaaaggatgatctttagtttaaa-gctaaagagat |
330 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
22406 |
ttcttttatgcccatcacatagaggatatagtataataccaccctacgaccaaaaggaaactcataaaaggatgatctttagtttaaaagctaaagagat |
22307 |
T |
|
| Q |
331 |
ggnnnnnnntgtattcaacccaattagggggcgaagaagtgttaaagggtctaaaatgtcaagactgtgggaaccaagcaaagaaggattgtgcatactc |
430 |
Q |
| |
|
|| |||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22306 |
ggaaaaaaatgtattcaacccaattaggggg---agaagtgttaaagggtctaaaatgttaagactgtgggaaccaagcaaagaaggattgtgcatactc |
22210 |
T |
|
| Q |
431 |
aaggtgcagaagttgctgcaaaaacaaagattttaactgccataca |
476 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22209 |
aaggtgcagaagttgctgcaaaaacaaagattttaactgccataca |
22164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0105; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 134 - 197
Target Start/End: Complemental strand, 24967 - 24904
Alignment:
| Q |
134 |
cttactttctctctaacatcattccaatccggtccttcttctctcacactctattcatacccat |
197 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
24967 |
cttactttctctctaacatcattccaatccggttcttcttctctcacactctattcatacccat |
24904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0105; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 192 - 236
Target Start/End: Complemental strand, 24885 - 24841
Alignment:
| Q |
192 |
acccatccatgaattcactctagagcggtgagtggcttcgttctt |
236 |
Q |
| |
|
|||||||||||||||||||| ||| |||||||||||||||||||| |
|
|
| T |
24885 |
acccatccatgaattcactccagatcggtgagtggcttcgttctt |
24841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 199; Significance: 1e-108; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 232 - 476
Target Start/End: Original strand, 15708819 - 15709061
Alignment:
| Q |
232 |
ttcttttatgcccatcacatagaggatatagtataataccaccctacgaccaaaaggaaactcataaaaggatgatctttagtttaaa-gctaaagagat |
330 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
15708819 |
ttcttttatgcccatcacatagaggatatagtataataccaccctacgaccaaaaggaaactcataaaaggatgatctttagtttaaaagctaaagagat |
15708918 |
T |
|
| Q |
331 |
ggnnnnnnntgtattcaacccaattagggggcgaagaagtgttaaagggtctaaaatgtcaagactgtgggaaccaagcaaagaaggattgtgcatactc |
430 |
Q |
| |
|
|| |||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15708919 |
ggaaaaaaatgtattcaacccaattaggggg---agaagtgttaaagggtctaaaatgttaagactgtgggaaccaagcaaagaaggattgtgcatactc |
15709015 |
T |
|
| Q |
431 |
aaggtgcagaagttgctgcaaaaacaaagattttaactgccataca |
476 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15709016 |
aaggtgcagaagttgctgcaaaaacaaagattttaactgccataca |
15709061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 232 - 476
Target Start/End: Complemental strand, 26795981 - 26795733
Alignment:
| Q |
232 |
ttcttttatgcccatcacatagaggatatagtataataccaccctacgaccaaaagg----aaactcataaaaggatgatctttagtttaaa-gctaaag |
326 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||| |||||| |||| ||||||||| ||||| |||||| |||||||||||||| ||| ||||||| |
|
|
| T |
26795981 |
ttcttttatgcccatcacatagagtatatagtatggtaccactctacaaccaaaaggttgtaaactaataaaaagatgatctttagttaaaaagctaaag |
26795882 |
T |
|
| Q |
327 |
agatggnnnnnnntgtattcaacccaattagggggcgaagaagtgttaaagggtctaaaatgtcaagactgtgggaaccaagcaaagaaggattgtgcat |
426 |
Q |
| |
|
||||| || ||||||| |||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26795881 |
ggatggaaaaga-tgcattcaacacaattaggggaagaagaagtgttaaagggtccaaaatgtcaagactgtgggaaccaagcaaagaaggattgtgcat |
26795783 |
T |
|
| Q |
427 |
actcaaggtgcagaagttgctgcaaaaacaaagattttaactgccataca |
476 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
26795782 |
actcaaggtgcagaagttgctgcaaaaacaaaggttttaactgccataca |
26795733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 134 - 197
Target Start/End: Original strand, 15707358 - 15707421
Alignment:
| Q |
134 |
cttactttctctctaacatcattccaatccggtccttcttctctcacactctattcatacccat |
197 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15707358 |
cttactttctctctaacatcattccaatccggtccttcttctctcacactctattcatacccat |
15707421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 192 - 236
Target Start/End: Original strand, 15707440 - 15707484
Alignment:
| Q |
192 |
acccatccatgaattcactctagagcggtgagtggcttcgttctt |
236 |
Q |
| |
|
|||||||||||||||||||| ||| |||||||||||||||||||| |
|
|
| T |
15707440 |
acccatccatgaattcactccagatcggtgagtggcttcgttctt |
15707484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 192; Significance: 1e-104; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 232 - 472
Target Start/End: Original strand, 3380883 - 3381120
Alignment:
| Q |
232 |
ttcttttatgcccatcacatagaggatatagtataataccaccctacgaccaaaaggaaactcataaaaggatgatctttagtttaaa-gctaaagagat |
330 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
3380883 |
ttcttttatgcccatcacatagaggatatagtataataccaccctacgaccaaaaggaaactcataaaaggatgatctttagtttaaaagctaaagagat |
3380982 |
T |
|
| Q |
331 |
ggnnnnnnntgtattcaacccaattagggggcgaagaagtgttaaagggtctaaaatgtcaagactgtgggaaccaagcaaagaaggattgtgcatactc |
430 |
Q |
| |
|
|| ||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3380983 |
ggaaaaaaatgtattcaacccaattagggg----agaagtgttaaagggactaaaatgtcaagactgtgggaaccaagcaaagaaggattgtgcatactc |
3381078 |
T |
|
| Q |
431 |
aaggtgcagaagttgctgcaaaaacaaagattttaactgcca |
472 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3381079 |
aaggtgcagaagttgctgcaaaaacaaagattttaactgcca |
3381120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 134 - 189
Target Start/End: Original strand, 3378229 - 3378284
Alignment:
| Q |
134 |
cttactttctctctaacatcattccaatccggtccttcttctctcacactctattc |
189 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3378229 |
cttactttctctctaacatcattccaatccggtccttcttctctcacactctattc |
3378284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 192 - 236
Target Start/End: Original strand, 3378316 - 3378360
Alignment:
| Q |
192 |
acccatccatgaattcactctagagcggtgagtggcttcgttctt |
236 |
Q |
| |
|
|||||||||||||||||||| ||| |||||||||||||||||||| |
|
|
| T |
3378316 |
acccatccatgaattcactccagatcggtgagtggcttcgttctt |
3378360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 159; Significance: 2e-84; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 268 - 476
Target Start/End: Original strand, 44498316 - 44498522
Alignment:
| Q |
268 |
taccaccctacgaccaaaaggaaactcataaaaggatgatctttagtttaaa-gctaaagagatggnnnnnnntgtattcaacccaattagggggcgaag |
366 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||| ||||||| || |
|
|
| T |
44498316 |
taccaccctacgaccaaaaggaaactcataaaaggatgatctttagtttaaaagctaaagagatggaaaaaaatgtattcaacccaactaggggg---ag |
44498412 |
T |
|
| Q |
367 |
aagtgttaaagggtctaaaatgtcaagactgtgggaaccaagcaaagaaggattgtgcatactcaaggtgcagaagttgctgcaaaaacaaagattttaa |
466 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44498413 |
aagtgttaaagggtctaaaatgttaagactgtgggaaccaagcaaagaaggattgtgcatactcaaggtgcagaagttgctgcaaaaacaaagattttaa |
44498512 |
T |
|
| Q |
467 |
ctgccataca |
476 |
Q |
| |
|
|||||||||| |
|
|
| T |
44498513 |
ctgccataca |
44498522 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 134 - 197
Target Start/End: Original strand, 44495504 - 44495567
Alignment:
| Q |
134 |
cttactttctctctaacatcattccaatccggtccttcttctctcacactctattcatacccat |
197 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| |
|
|
| T |
44495504 |
cttactttctctctaacatcattccaatccggttcttcttctctcacactccattcatacccat |
44495567 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 232 - 270
Target Start/End: Original strand, 44498151 - 44498189
Alignment:
| Q |
232 |
ttcttttatgcccatcacatagaggatatagtataatac |
270 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44498151 |
ttcttttatgcccatcacatagaggatatagtataatac |
44498189 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 195 - 236
Target Start/End: Original strand, 44495589 - 44495630
Alignment:
| Q |
195 |
catccatgaattcactctagagcggtgagtggcttcgttctt |
236 |
Q |
| |
|
||||||||||||||||| ||| |||||||||||||||||||| |
|
|
| T |
44495589 |
catccatgaattcactccagatcggtgagtggcttcgttctt |
44495630 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1526 (Bit Score: 56; Significance: 5e-23; HSPs: 2)
Name: scaffold1526
Description:
Target: scaffold1526; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 134 - 189
Target Start/End: Complemental strand, 1304 - 1249
Alignment:
| Q |
134 |
cttactttctctctaacatcattccaatccggtccttcttctctcacactctattc |
189 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1304 |
cttactttctctctaacatcattccaatccggtccttcttctctcacactctattc |
1249 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1526; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 192 - 236
Target Start/End: Complemental strand, 1217 - 1173
Alignment:
| Q |
192 |
acccatccatgaattcactctagagcggtgagtggcttcgttctt |
236 |
Q |
| |
|
|||||||||||||||||||| ||| |||||||||||||||||||| |
|
|
| T |
1217 |
acccatccatgaattcactccagatcggtgagtggcttcgttctt |
1173 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 49 - 133
Target Start/End: Original strand, 21221835 - 21221922
Alignment:
| Q |
49 |
ctgaccaaattaccaaagaggatcaa---aacatttaagataggaataatttgtggctgatgatgttgctcctaatagtgatacaata |
133 |
Q |
| |
|
|||| ||||||||||||||||||||| |||| | || |||||||| || |||||||||||||||||||||||||||||||| |||| |
|
|
| T |
21221835 |
ctgaacaaattaccaaagaggatcaagaaaacactgaaaataggaattatctgtggctgatgatgttgctcctaatagtgatataata |
21221922 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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