View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18957_high_6 (Length: 437)
Name: NF18957_high_6
Description: NF18957
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18957_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 300; Significance: 1e-168; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 67 - 426
Target Start/End: Original strand, 1009490 - 1009849
Alignment:
| Q |
67 |
atatttcatttaattagctattaaaatagcaacaactagaaatgcttggaaataaatagtatgaattaagttaagagttttgcttgtgtaagagattaaa |
166 |
Q |
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| T |
1009490 |
atatttcatttaattagctattaaaatagcaacaactagaaatgcttggaaataaataatatgaattaagttaagagttttgcttgagtaagagatcaaa |
1009589 |
T |
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| Q |
167 |
acagagtgctaaaaaggtgttagaacataagcttgttgttttggaaaattatgnnnnnnnncacagtaatatattggagaatagaagagtttctaccctt |
266 |
Q |
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| T |
1009590 |
acagagtgctaaaaaggtgttagaacataagcttgttgttttggaaaattttgaaaaataacacagtaatatattggagaatagaagagtttctaccctt |
1009689 |
T |
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| Q |
267 |
ctcctcttgaataaacttctattaacattcactaaatcgatctccttccttttttatctaatttgaaaatgcttaaaacttgaaagactcattagttctt |
366 |
Q |
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| T |
1009690 |
ctcctcttgaataaacttctattaacattcactaaattgatctccttccttttttatctaatttgaaaatagttaaaacttgaaagactcatttgttctt |
1009789 |
T |
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| Q |
367 |
aacaaggttttaaattgttttcgttgtaacggtcacaattgtgtcacagtccttgatatt |
426 |
Q |
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| T |
1009790 |
aacaaggttttaaattgttttcgttttaacggtcacaattgtgtcacagtccttgatatt |
1009849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 265 - 379
Target Start/End: Original strand, 1013811 - 1013925
Alignment:
| Q |
265 |
ttctcctcttgaataaacttctattaacattcactaaatcgatctccttccttttttatctaatttgaaaatgcttaaaacttgaaagac-----tcatt |
359 |
Q |
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| T |
1013811 |
ttctcctcttgaagaagcttctattaacctt-----aatcgatctcttcccttttttatctgatttgaaagtgcttaagagttgaaagactcgagtcatt |
1013905 |
T |
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| Q |
360 |
agttcttaacaaggttttaa |
379 |
Q |
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| T |
1013906 |
agttcttaacaaggttttaa |
1013925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 22 - 66
Target Start/End: Original strand, 1009425 - 1009469
Alignment:
| Q |
22 |
ggtaacctaactgtacaacattgagccgtcgaagtagcatttatt |
66 |
Q |
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| T |
1009425 |
ggtaacctaactgtacaacattgagccgtcgaagtaacatttatt |
1009469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 264 - 426
Target Start/End: Complemental strand, 40639154 - 40638992
Alignment:
| Q |
264 |
cttctcctcttgaataaacttctattaacattcactaaatcgatctccttccttttttatctaatttgaaaatgcttaaaacttgaaagac-----tcat |
358 |
Q |
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|||||||||||||| || ||||||||||| || ||||| |||| ||||||||||||||||||||||| ||||||||| ||||||||| |||| |
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| T |
40639154 |
cttctcctcttgaagaaccttctattaacctt-----aatcgttctctttccttttttatctaatttgaaagtgcttaaaagttgaaagaccctagtcat |
40639060 |
T |
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| Q |
359 |
tagttcttaacaaggttttaaattgttttcgttgtaacggtcacaattgtgtcacagtccttgatatt |
426 |
Q |
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| T |
40639059 |
tagttcttaacaaggttttaaattgtcaccgtgataaccgtcgcgattttgtcacaatccttgatatt |
40638992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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