View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18957_low_1 (Length: 646)

Name: NF18957_low_1
Description: NF18957
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18957_low_1
NF18957_low_1
[»] chr1 (7 HSPs)
chr1 (94-646)||(27488997-27489541)
chr1 (93-646)||(27481799-27482346)
chr1 (358-591)||(12599229-12599461)
chr1 (15-73)||(9316096-9316154)
chr1 (15-73)||(21814953-21815011)
chr1 (15-69)||(27048261-27048315)
chr1 (15-73)||(47294155-47294213)
[»] chr8 (5 HSPs)
chr8 (359-591)||(14623450-14623682)
chr8 (11-73)||(44245932-44245994)
chr8 (15-73)||(9906936-9906994)
chr8 (15-61)||(38657391-38657437)
chr8 (32-73)||(5064045-5064086)
[»] chr3 (8 HSPs)
chr3 (359-572)||(12017971-12018184)
chr3 (548-646)||(2309108-2309206)
chr3 (15-79)||(18866912-18866976)
chr3 (16-79)||(4675061-4675124)
chr3 (441-536)||(2310076-2310171)
chr3 (15-73)||(4501252-4501310)
chr3 (23-73)||(4506578-4506628)
chr3 (15-73)||(27900664-27900722)
[»] chr6 (9 HSPs)
chr6 (359-511)||(34123640-34123792)
chr6 (359-591)||(34210897-34211129)
chr6 (15-79)||(14118586-14118650)
chr6 (15-79)||(14122544-14122608)
chr6 (16-79)||(7826123-7826186)
chr6 (16-79)||(10800600-10800663)
chr6 (15-73)||(18765823-18765881)
chr6 (16-79)||(24908556-24908619)
chr6 (15-73)||(1051355-1051413)
[»] chr5 (2 HSPs)
chr5 (15-79)||(9335177-9335241)
chr5 (16-79)||(40821357-40821420)
[»] chr7 (6 HSPs)
chr7 (16-79)||(41542595-41542658)
chr7 (16-79)||(28442581-28442644)
chr7 (15-73)||(9701926-9701984)
chr7 (15-73)||(41454942-41455000)
chr7 (15-73)||(43364383-43364441)
chr7 (15-73)||(48455520-48455578)
[»] chr2 (3 HSPs)
chr2 (15-79)||(33033885-33033949)
chr2 (16-79)||(44611378-44611441)
chr2 (15-73)||(43669907-43669966)
[»] scaffold0045 (2 HSPs)
scaffold0045 (15-79)||(2768-2833)
scaffold0045 (15-79)||(9150-9215)
[»] scaffold0265 (1 HSPs)
scaffold0265 (15-73)||(17798-17856)
[»] chr4 (2 HSPs)
chr4 (15-73)||(13568165-13568223)
chr4 (15-73)||(667701-667759)
[»] scaffold0291 (1 HSPs)
scaffold0291 (15-73)||(1736-1794)
[»] scaffold0012 (1 HSPs)
scaffold0012 (15-73)||(202536-202594)


Alignment Details
Target: chr1 (Bit Score: 437; Significance: 0; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 437; E-Value: 0
Query Start/End: Original strand, 94 - 646
Target Start/End: Original strand, 27488997 - 27489541
Alignment:
Q  94 tagttacaaacccctttccacttaaagcaatagttaccattgttcttaaacacatttttt-attaaaaatttgaaatgaggaaaatcattattatttaaa 192  Q
    |||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  27488997 tagttacaaaccgctttgcacttaaagcaatagttaccattgttcttaaacacatttttttattaaaaatttgaaatgaggaaaatcattattatttaaa 27489096  T
Q  193 acggagcacaaaaacatttaacaat---cccagtgtgatttgaactctttctattnnnnnnncacctaatgttgacacgacacgttcaatactatatatc 289  Q
    |||||||||||||||||||||||||   |||||||||||||||||||||||||||       |||||||||||            |||||||||||||||    
T  27489097 acggagcacaaaaacatttaacaatgatcccagtgtgatttgaactctttctattgagaaaacacctaatgtt------------tcaatactatatatc 27489184  T
Q  290 atgaagaaatcatgcattaaacaattacaaatcgtaggaatatgatgaatattttccgtgtggtagtcgatcagccaaatagaagtacatatgtcccata 389  Q
    ||||| ||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27489185 atgaataaatcatgcattaaacaattacaaatcataggaatataatgaatattttccgtgtggtagtcgatcagccaaatagaagtacatatgtcccata 27489284  T
Q  390 gctccagtgcgaaattcatttttatatatagattccatagatacgatttcaccatccttaatctcgattgaacctagttttggataagatacagacattc 489  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  27489285 gctccagtgcgaaattcatttttatatatggattccatagatacgatttcaccatccttaatcttgattgaacctagttttggataagatacagacattc 27489384  T
Q  490 caacaaggtaacctttttcatttcctgccttctttcccgttccgtattttgtttttgctgtgtacaatgtccttccatcctaattcatttatcaaaaaca 589  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  27489385 caacaaggtaacctttttcatttcctgccttctttcccgttccgtattttgtttttgatgtgtacaatgtccttccatcctaattcatttatcaaaaaca 27489484  T
Q  590 aataatgaactaataatcatagatattatatatgtactaaaacaaaattaattttac 646  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  27489485 aataatgaactaataatcatagatattatatgtgtactaaaacaaaattaattttac 27489541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 93 - 646
Target Start/End: Original strand, 27481799 - 27482346
Alignment:
Q  93 ctagttacaaacccctttccacttaaagcaatagttaccattgttcttaaacacatttttt---attaaaaatttgaaatgaggaaaatcattattattt 189  Q
    ||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||    
T  27481799 ctagttacaaatccctttccacttaaagcaataattaccattgttcttaaacacatttttttttattaaaaatttgaaatgaggaaaatcattattattt 27481898  T
Q  190 aaaacggagcacaaaaacatttaacaat---cccagtgtgatttgaactctttctattnnnnnnncacctaatgttgacacgacacgttcaatactatat 286  Q
    ||||||||||||||||||||||||||||   |||||||||||||||||||||||||||       |||||||||||            ||||||||||||    
T  27481899 aaaacggagcacaaaaacatttaacaatgatcccagtgtgatttgaactctttctattgagaaaacacctaatgtt------------tcaatactatat 27481986  T
Q  287 atcatgaagaaatcatgcattaaacaattacaaatcgtaggaatatgatgaatattttccgtgtggtagtcgatcagccaaatagaagtacatatgtccc 386  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  27481987 atcatgaagaaatcatgcattaaacaattacaaatcataggaatatgatgaatattttccgtgtggtagtcgatcagccaaatagaagtacatatgcccc 27482086  T
Q  387 atagctccagtgcgaaattcatttttatatatagattccatagatacgatttcaccatccttaatctcgattgaacctagttttggataagatacagaca 486  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||    
T  27482087 atagctccagtgtgaaattcatttttatatatagattccatagatacgatttcaccatccttaatcttgattgaacctagttttggataaaatacagaca 27482186  T
Q  487 ttccaacaaggtaacctttttcatttcctgccttctttcccgttccgtattttgtttttgctgtgtacaatgtccttccatcctaattcatttatcaaaa 586  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  27482187 ttccaacaaggtaacctttttcatttcctgctttctttcccgttccgtattttgtttttgatgtgtacaatgtccttccatcctaattcatttatcaaaa 27482286  T
Q  587 acaaataatgaactaataatcatagatattatatatgtactaaaacaaaattaattttac 646  Q
    ||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||    
T  27482287 acaaataatgaactaataatcgtagatattatatgtgtactaaaacaaaattaattttac 27482346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 358 - 591
Target Start/End: Original strand, 12599229 - 12599461
Alignment:
Q  358 gatcagccaaatagaagtacatatgtcccatagctccagtgcgaaattcatttttatatatagattccatagatacgatttcaccatccttaatctcgat 457  Q
    ||||||||| |||||||| ||||| || |||| || |||   ||||||||||||||||||| ||||| || |  | | |||||||||| | |||||   |    
T  12599229 gatcagccagatagaagtgcatatctctcataactgcaggtagaaattcatttttatatattgattctatcgc-atggtttcaccatcatcaatcttcgt 12599327  T
Q  458 tgaacctagttttggataagatacagacattccaacaaggtaacctttttcatttcctgccttctttcccgttccgtattttgtttttgctgtgtacaat 557  Q
    ||||||||||||||||||| |||| |||||||||||||||||||||||  |||| ||||| |  ||||||||||| ||| ||| | | | |||  ||||     
T  12599328 tgaacctagttttggataacatactgacattccaacaaggtaacctttcgcattccctgcttcttttcccgttccatatgttggtgtcgatgtacacaaa 12599427  T
Q  558 gtccttccatcctaattcatttatcaaaaacaaa 591  Q
    |||||||| |||||||| ||| ||| ||||||||    
T  12599428 gtccttccgtcctaattaattaatccaaaacaaa 12599461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 15 - 73
Target Start/End: Complemental strand, 9316154 - 9316096
Alignment:
Q  15 aatatgtaataatatcaattgataattaggatctgcaacactaatccaagaatacgtat 73  Q
    ||||||| ||||||||||||||||||||| ||| ||||||||||||| |||||||||||    
T  9316154 aatatgtgataatatcaattgataattagaatccgcaacactaatccgagaatacgtat 9316096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 15 - 73
Target Start/End: Complemental strand, 21815011 - 21814953
Alignment:
Q  15 aatatgtaataatatcaattgataattaggatctgcaacactaatccaagaatacgtat 73  Q
    ||||||| ||||||||||||||||||||| ||| ||||||||||||| |||||||||||    
T  21815011 aatatgtgataatatcaattgataattagaatccgcaacactaatccgagaatacgtat 21814953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 15 - 69
Target Start/End: Complemental strand, 27048315 - 27048261
Alignment:
Q  15 aatatgtaataatatcaattgataattaggatctgcaacactaatccaagaatac 69  Q
    ||||||| |||||||||||||||||||||||||| |||||||||||| |||||||    
T  27048315 aatatgtgataatatcaattgataattaggatctccaacactaatccgagaatac 27048261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 15 - 73
Target Start/End: Complemental strand, 47294213 - 47294155
Alignment:
Q  15 aatatgtaataatatcaattgataattaggatctgcaacactaatccaagaatacgtat 73  Q
    ||||||| ||||||||||||||||||||| ||  ||||||||||||  |||||||||||    
T  47294213 aatatgtgataatatcaattgataattagaattcgcaacactaatcttagaatacgtat 47294155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 81; Significance: 8e-38; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 359 - 591
Target Start/End: Original strand, 14623450 - 14623682
Alignment:
Q  359 atcagccaaatagaagtacatatgtcccatagctccagtgcgaaattcatttttatatatagattccatagatacgatttcaccatccttaatctcgatt 458  Q
    ||||||||||||||||| ||||| ||||||| || ||| | ||||||||||||||||||| ||||| | ||  ||| |||||||||| | |||||  |||    
T  14623450 atcagccaaatagaagtgcatatctcccataactgcagggagaaattcatttttatatattgattctacagtcacggtttcaccatcatcaatcttcatt 14623549  T
Q  459 gaacctagttttggataagatacagacattccaacaaggtaacctttttcatttcctgccttctttcccgttccgtattttgtttttgctgtgtacaatg 558  Q
    ||||||| |||||||||| |||||||||||||||||||||||||||  ||||| ||||| |  ||||||||||| ||| ||| | | | |||  ||||      
T  14623550 gaacctaattttggataacatacagacattccaacaaggtaaccttcctcattccctgcttcttttcccgttccatatgttggtgtcgatgtacacaaaa 14623649  T
Q  559 tccttccatcctaattcatttatcaaaaacaaa 591  Q
    |||||||||||||||| ||| ||  ||||||||    
T  14623650 tccttccatcctaattaattaatggaaaacaaa 14623682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 11 - 73
Target Start/End: Original strand, 44245932 - 44245994
Alignment:
Q  11 gaagaatatgtaataatatcaattgataattaggatctgcaacactaatccaagaatacgtat 73  Q
    ||||||||||| |||||||||||||||| |||| ||| |||||||||||||||||||||||||    
T  44245932 gaagaatatgtgataatatcaattgatagttagaatccgcaacactaatccaagaatacgtat 44245994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 15 - 73
Target Start/End: Original strand, 9906936 - 9906994
Alignment:
Q  15 aatatgtaataatatcaattgataattaggatctgcaacactaatccaagaatacgtat 73  Q
    ||||||| ||||||||||||||||||||| ||| ||||||||||||| |||||||||||    
T  9906936 aatatgtgataatatcaattgataattagaatccgcaacactaatccgagaatacgtat 9906994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 15 - 61
Target Start/End: Complemental strand, 38657437 - 38657391
Alignment:
Q  15 aatatgtaataatatcaattgataattaggatctgcaacactaatcc 61  Q
    ||||||| ||||||||||||||||||||| ||| |||||||||||||    
T  38657437 aatatgtgataatatcaattgataattagaatccgcaacactaatcc 38657391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 32 - 73
Target Start/End: Original strand, 5064045 - 5064086
Alignment:
Q  32 attgataattaggatctgcaacactaatccaagaatacgtat 73  Q
    |||||||||||| ||| ||||||||||||| |||||||||||    
T  5064045 attgataattagaatccgcaacactaatccgagaatacgtat 5064086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 79; Significance: 1e-36; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 359 - 572
Target Start/End: Complemental strand, 12018184 - 12017971
Alignment:
Q  359 atcagccaaatagaagtacatatgtcccatagctccagtgcgaaattcatttttatatatagattccatagatacgatttcaccatccttaatctcgatt 458  Q
    ||||||||||||||||| ||||| ||||||| || ||| | ||||||||||||||||||| ||||| |  |  ||  |||||||||| | |||||  |||    
T  12018184 atcagccaaatagaagtgcatatctcccataacttcagggagaaattcatttttatatattgattctacggtcacagtttcaccatcatcaatcttcatt 12018085  T
Q  459 gaacctagttttggataagatacagacattccaacaaggtaacctttttcatttcctgccttct-ttcccgttccgtattttgtttttgctgtgtacaat 557  Q
    |||||||||||||||||| |||||||||||||||||||||||||||  ||||| ||||| |||| |||| ||||| ||||||| | ||| |||  ||||     
T  12018084 gaacctagttttggataacatacagacattccaacaaggtaaccttcctcattccctgc-ttctgttcctgttccatattttggtgttgatgtacacaaa 12017986  T
Q  558 gtccttccatcctaa 572  Q
    |||||||||||||||    
T  12017985 gtccttccatcctaa 12017971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 548 - 646
Target Start/End: Complemental strand, 2309206 - 2309108
Alignment:
Q  548 tgtgtacaatgtccttccatcctaattcatttatcaaaaacaaataatgaactaataatcatagatattatatatgtactaaaacaaaattaattttac 646  Q
    |||| |||||||||||||||||||||| |||||||||||||||||| ||||||||||| |||| | |||||| ||| ||||||||||||| ||||||||    
T  2309206 tgtgcacaatgtccttccatcctaattaatttatcaaaaacaaatagtgaactaataaacatatagattatacatgcactaaaacaaaataaattttac 2309108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 15 - 79
Target Start/End: Complemental strand, 18866976 - 18866912
Alignment:
Q  15 aatatgtaataatatcaattgataattaggatctgcaacactaatccaagaatacgtatgaatag 79  Q
    ||||||| |||||||||||||||||||||||||||||| |||||||| |||||||||||||||||    
T  18866976 aatatgtgataatatcaattgataattaggatctgcaatactaatccgagaatacgtatgaatag 18866912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 16 - 79
Target Start/End: Complemental strand, 4675124 - 4675061
Alignment:
Q  16 atatgtaataatatcaattgataattaggatctgcaacactaatccaagaatacgtatgaatag 79  Q
    |||||| |||||||||||||||||||| |||||||||||||||||| |||||||||||||||||    
T  4675124 atatgtgataatatcaattgataattaagatctgcaacactaatccgagaatacgtatgaatag 4675061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 441 - 536
Target Start/End: Complemental strand, 2310171 - 2310076
Alignment:
Q  441 ccatccttaatctcgattgaacctagttttggataagatacagacattccaacaaggtaacctttttcatttcctgccttctttcccgttccgtat 536  Q
    |||||||||||||  |||||||||| |||||||||  | |||||||||||||||| |||||||| |||||||||  | | ||||||||||||||||    
T  2310171 ccatccttaatcttaattgaacctaattttggatagcaaacagacattccaacaacgtaaccttcttcatttccaacttcctttcccgttccgtat 2310076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 15 - 73
Target Start/End: Complemental strand, 4501310 - 4501252
Alignment:
Q  15 aatatgtaataatatcaattgataattaggatctgcaacactaatccaagaatacgtat 73  Q
    ||||||| ||||||||||||||||||||| ||| ||||||||||||| |||||||||||    
T  4501310 aatatgtgataatatcaattgataattagaatccgcaacactaatcctagaatacgtat 4501252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 23 - 73
Target Start/End: Complemental strand, 4506628 - 4506578
Alignment:
Q  23 ataatatcaattgataattaggatctgcaacactaatccaagaatacgtat 73  Q
    ||||||||||||||||||||| ||| ||||||||||||| |||||||||||    
T  4506628 ataatatcaattgataattagaatccgcaacactaatcctagaatacgtat 4506578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 15 - 73
Target Start/End: Complemental strand, 27900722 - 27900664
Alignment:
Q  15 aatatgtaataatatcaattgataattaggatctgcaacactaatccaagaatacgtat 73  Q
    ||||||| ||||||||||||||||||||| ||   |||||||||||| |||||||||||    
T  27900722 aatatgtgataatatcaattgataattagaatacacaacactaatccgagaatacgtat 27900664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 69; Significance: 1e-30; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 359 - 511
Target Start/End: Original strand, 34123640 - 34123792
Alignment:
Q  359 atcagccaaatagaagtacatatgtcccatagctccagtgcgaaattcatttttatatatagattccatagatacgatttcaccatccttaatctcgatt 458  Q
    ||||||||||||||||| ||| | ||||||| || ||| | ||||||||||||||||||| ||||| |  |  ||| |||||||||| | |||||  |||    
T  34123640 atcagccaaatagaagtgcatgtctcccataactgcagggagaaattcatttttatatattgattctacggtcacggtttcaccatcatcaatctttatt 34123739  T
Q  459 gaacctagttttggataagatacagacattccaacaaggtaacctttttcatt 511  Q
    |||||| ||||||||||| |||||||||||||||||||||||||||| |||||    
T  34123740 gaacctggttttggataacatacagacattccaacaaggtaacctttctcatt 34123792  T

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Target: chr6; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 359 - 591
Target Start/End: Original strand, 34210897 - 34211129
Alignment:
Q  359 atcagccaaatagaagtacatatgtcccatagctccagtgcgaaattcatttttatatatagattccatagatacgatttcaccatccttaatctcgatt 458  Q
    ||||||||||||||| | ||||| ||||||| || | | | ||||||||||||||||||| ||||| |  |  ||| |||||||||| | |||||  |||    
T  34210897 atcagccaaatagaaatgcatatctcccataactgctgggagaaattcatttttatatattgattctacggtcacggtttcaccatcatcaatcttcatt 34210996  T
Q  459 gaacctagttttggataagatacagacattccaacaaggtaacctttttcatttcctgccttctttcccgttccgtattttgtttttgctgtgtacaatg 558  Q
    |||||| ||||||||||| |||||||||| ||||||||||||||||  ||||| ||||| |  ||||||||||| ||| ||| | | | |||  |||| |    
T  34210997 gaacctggttttggataacatacagacatcccaacaaggtaaccttcctcattccctgcttcttttcccgttccatatgttggtgtcgatgtacacaaag 34211096  T
Q  559 tccttccatcctaattcatttatcaaaaacaaa 591  Q
    | |||||||||||||| ||| ||  ||||||||    
T  34211097 ttcttccatcctaattaattaatgcaaaacaaa 34211129  T

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Target: chr6; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 15 - 79
Target Start/End: Original strand, 14118586 - 14118650
Alignment:
Q  15 aatatgtaataatatcaattgataattaggatctgcaacactaatccaagaatacgtatgaatag 79  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||    
T  14118586 aatatgtgataatatcaattgataattaggatctgcaacactaatccgagaatatgtatgaatag 14118650  T

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Target: chr6; HSP #4
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 15 - 79
Target Start/End: Original strand, 14122544 - 14122608
Alignment:
Q  15 aatatgtaataatatcaattgataattaggatctgcaacactaatccaagaatacgtatgaatag 79  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||    
T  14122544 aatatgtgataatatcaattgataattaggatctgcaacactaatccgagaatatgtatgaatag 14122608  T

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Target: chr6; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 16 - 79
Target Start/End: Complemental strand, 7826186 - 7826123
Alignment:
Q  16 atatgtaataatatcaattgataattaggatctgcaacactaatccaagaatacgtatgaatag 79  Q
    |||||| ||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||    
T  7826186 atatgtgataatatcaattgataattaggatctgcaacactaatccgagaatacatatgaatag 7826123  T

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Target: chr6; HSP #6
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 16 - 79
Target Start/End: Original strand, 10800600 - 10800663
Alignment:
Q  16 atatgtaataatatcaattgataattaggatctgcaacactaatccaagaatacgtatgaatag 79  Q
    |||||| ||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||    
T  10800600 atatgtgataatatcaattgataattaggatctgcaacactaatccgagaatacatatgaatag 10800663  T

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Target: chr6; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 15 - 73
Target Start/End: Complemental strand, 18765881 - 18765823
Alignment:
Q  15 aatatgtaataatatcaattgataattaggatctgcaacactaatccaagaatacgtat 73  Q
    ||||||| ||||||||||||||||||||| ||| |||||||||||||||||||||||||    
T  18765881 aatatgtgataatatcaattgataattagaatccgcaacactaatccaagaatacgtat 18765823  T

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Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 16 - 79
Target Start/End: Complemental strand, 24908619 - 24908556
Alignment:
Q  16 atatgtaataatatcaattgataattaggatctgcaacactaatccaagaatacgtatgaatag 79  Q
    |||||| |||||||||||| ||| ||||||| |||||||||||||| ||||||| |||||||||    
T  24908619 atatgtgataatatcaattaatagttaggatttgcaacactaatccgagaatacatatgaatag 24908556  T

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Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 15 - 73
Target Start/End: Complemental strand, 1051413 - 1051355
Alignment:
Q  15 aatatgtaataatatcaattgataattaggatctgcaacactaatccaagaatacgtat 73  Q
    ||||||| ||||||||||||||||||||| |||||||| |||||||| |||||| ||||    
T  1051413 aatatgtgataatatcaattgataattagaatctgcaaaactaatcctagaatatgtat 1051355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 53; Significance: 4e-21; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 15 - 79
Target Start/End: Original strand, 9335177 - 9335241
Alignment:
Q  15 aatatgtaataatatcaattgataattaggatctgcaacactaatccaagaatacgtatgaatag 79  Q
    ||||||| |||||||||||||||||||||||| |||||||||||||| |||||||||||||||||    
T  9335177 aatatgtgataatatcaattgataattaggatatgcaacactaatccgagaatacgtatgaatag 9335241  T

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Target: chr5; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 16 - 79
Target Start/End: Original strand, 40821357 - 40821420
Alignment:
Q  16 atatgtaataatatcaattgataattaggatctgcaacactaatccaagaatacgtatgaatag 79  Q
    |||||| ||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||    
T  40821357 atatgtgataatatcaattgataattaggatctgcaacactaatccgagaatacatatgaatag 40821420  T

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Target: chr7 (Bit Score: 52; Significance: 2e-20; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 16 - 79
Target Start/End: Complemental strand, 41542658 - 41542595
Alignment:
Q  16 atatgtaataatatcaattgataattaggatctgcaacactaatccaagaatacgtatgaatag 79  Q
    |||||| ||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||    
T  41542658 atatgtgataatatcaattgataattaggatctgcaacactaatccgagaatacatatgaatag 41542595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 16 - 79
Target Start/End: Complemental strand, 28442644 - 28442581
Alignment:
Q  16 atatgtaataatatcaattgataattaggatctgcaacactaatccaagaatacgtatgaatag 79  Q
    |||||| |||||||||||||||||||| ||| |||||||||||||| ||||||| |||||||||    
T  28442644 atatgtgataatatcaattgataattaagatatgcaacactaatccgagaatacatatgaatag 28442581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 15 - 73
Target Start/End: Complemental strand, 9701984 - 9701926
Alignment:
Q  15 aatatgtaataatatcaattgataattaggatctgcaacactaatccaagaatacgtat 73  Q
    ||||||| ||||||||||||||||||||| ||| ||||||||||||| |||||||||||    
T  9701984 aatatgtgataatatcaattgataattagaatccgcaacactaatccgagaatacgtat 9701926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 15 - 73
Target Start/End: Original strand, 41454942 - 41455000
Alignment:
Q  15 aatatgtaataatatcaattgataattaggatctgcaacactaatccaagaatacgtat 73  Q
    ||||||| ||||||||||||||||||||| ||| |||||| |||||| |||||||||||    
T  41454942 aatatgtgataatatcaattgataattagaatccgcaacattaatcctagaatacgtat 41455000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 15 - 73
Target Start/End: Complemental strand, 43364441 - 43364383
Alignment:
Q  15 aatatgtaataatatcaattgataattaggatctgcaacactaatccaagaatacgtat 73  Q
    ||||||| ||||||||| ||||||||||| ||| ||||||||||||||||| |||||||    
T  43364441 aatatgtgataatatcacttgataattagaatccgcaacactaatccaagagtacgtat 43364383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 15 - 73
Target Start/End: Complemental strand, 48455578 - 48455520
Alignment:
Q  15 aatatgtaataatatcaattgataattaggatctgcaacactaatccaagaatacgtat 73  Q
    ||||||| ||||||||||| ||||||||| ||| ||| ||||||||| |||||||||||    
T  48455578 aatatgtgataatatcaatcgataattagaatccgcatcactaatccgagaatacgtat 48455520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 1e-18; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 15 - 79
Target Start/End: Complemental strand, 33033949 - 33033885
Alignment:
Q  15 aatatgtaataatatcaattgataattaggatctgcaacactaatccaagaatacgtatgaatag 79  Q
    ||||||| ||||||||||||||||||||||||| ||||||||||||| |||||| ||||||||||    
T  33033949 aatatgtgataatatcaattgataattaggatcggcaacactaatccgagaatatgtatgaatag 33033885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 16 - 79
Target Start/End: Complemental strand, 44611441 - 44611378
Alignment:
Q  16 atatgtaataatatcaattgataattaggatctgcaacactaatccaagaatacgtatgaatag 79  Q
    |||||| |||||||||||||||||||||||| |||||||||||||| ||||||| |||||||||    
T  44611441 atatgtgataatatcaattgataattaggatttgcaacactaatccgagaatacatatgaatag 44611378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 15 - 73
Target Start/End: Complemental strand, 43669966 - 43669907
Alignment:
Q  15 aatatgtaataatatcaattgataattaggatctgcaacac-taatccaagaatacgtat 73  Q
    ||||||| ||||||||||||||||||||| ||| ||||||| |||||| |||||||||||    
T  43669966 aatatgtgataatatcaattgataattagaatccgcaacacttaatccgagaatacgtat 43669907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 46; Significance: 7e-17; HSPs: 2)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 15 - 79
Target Start/End: Original strand, 2768 - 2833
Alignment:
Q  15 aatatgtaataatatcaattgataattaggatctgcaacact-aatccaagaatacgtatgaatag 79  Q
    ||||||| ||||||||||||||||||||||||| |||||||| ||||| |||||||||||||||||    
T  2768 aatatgtgataatatcaattgataattaggatccgcaacactaaatccgagaatacgtatgaatag 2833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045; HSP #2
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 15 - 79
Target Start/End: Original strand, 9150 - 9215
Alignment:
Q  15 aatatgtaataatatcaattgataattaggatctgcaacact-aatccaagaatacgtatgaatag 79  Q
    ||||||| ||||||||||||||||||||||||| |||||||| ||||| |||||||||||||||||    
T  9150 aatatgtgataatatcaattgataattaggatccgcaacactaaatccgagaatacgtatgaatag 9215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0265 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: scaffold0265
Description:

Target: scaffold0265; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 15 - 73
Target Start/End: Original strand, 17798 - 17856
Alignment:
Q  15 aatatgtaataatatcaattgataattaggatctgcaacactaatccaagaatacgtat 73  Q
    ||||||| ||||||||||||||||||||| ||| ||||||||||||| |||||||||||    
T  17798 aatatgtgataatatcaattgataattagaatccgcaacactaatccgagaatacgtat 17856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 15 - 73
Target Start/End: Complemental strand, 13568223 - 13568165
Alignment:
Q  15 aatatgtaataatatcaattgataattaggatctgcaacactaatccaagaatacgtat 73  Q
    ||||||| ||||||||||||||||||||| ||| ||||||||||||| |||||||||||    
T  13568223 aatatgtgataatatcaattgataattagaatccgcaacactaatcctagaatacgtat 13568165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 15 - 73
Target Start/End: Original strand, 667701 - 667759
Alignment:
Q  15 aatatgtaataatatcaattgataattaggatctgcaacactaatccaagaatacgtat 73  Q
    ||||||| ||||||||||||||||||||  |||  |||||||||||| |||||||||||    
T  667701 aatatgtgataatatcaattgataattataatccacaacactaatccgagaatacgtat 667759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0291 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0291
Description:

Target: scaffold0291; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 15 - 73
Target Start/End: Original strand, 1736 - 1794
Alignment:
Q  15 aatatgtaataatatcaattgataattaggatctgcaacactaatccaagaatacgtat 73  Q
    ||||||| ||||||||||||||||||||| ||| ||||||||||||| || ||||||||    
T  1736 aatatgtgataatatcaattgataattagaatccgcaacactaatccgagtatacgtat 1794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 15 - 73
Target Start/End: Complemental strand, 202594 - 202536
Alignment:
Q  15 aatatgtaataatatcaattgataattaggatctgcaacactaatccaagaatacgtat 73  Q
    ||||||| |||||| ||||||| |||||| ||| ||||| ||||||| |||||||||||    
T  202594 aatatgtgataataccaattgagaattagaatccgcaacgctaatccgagaatacgtat 202536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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