View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18957_low_11 (Length: 347)
Name: NF18957_low_11
Description: NF18957
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18957_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 19 - 344
Target Start/End: Complemental strand, 56492377 - 56492052
Alignment:
| Q |
19 |
actatgactatgatgatcatcatcatcaattcttgaacagtatcttctcactctcattacattacaaggaaacacaccaacacttacacccctcatcgca |
118 |
Q |
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| T |
56492377 |
actatgactatgatgatgatcatcatcaattcttgaacagtattttctcactctcattacattacaaggaaacacaccaacacttacacccctcatcgca |
56492278 |
T |
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| Q |
119 |
ttcatggcatggcatagcatggaaaccaaacaccaaatcaaatattatgttgttgtttcttttcaagttgcaactcctgtcttcagtttagccacgtcac |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56492277 |
ttcatggcatggcatagcatggaaaccaaacaccaaatcaaatattatgttgttgtttcttttcaagttgcaactcctgtcttcagtttagccacgtcac |
56492178 |
T |
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| Q |
219 |
taccctacccaatttcctctctttcaatatcctcttcaaaaacattcacctaaactaatactttctccagtcttaaatataaaagacaatcttttatcca |
318 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
56492177 |
taccctacccaatttcctttctttcaatatcctcttcaaaaacattcacctaaactaatactttctccaggcttaaatataaaagacaatcttttatcca |
56492078 |
T |
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| Q |
319 |
attaattttaatatatcaattttgtt |
344 |
Q |
| |
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|||||||||||||||||||||||||| |
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| T |
56492077 |
attaattttaatatatcaattttgtt |
56492052 |
T |
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