View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18957_low_12 (Length: 344)
Name: NF18957_low_12
Description: NF18957
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18957_low_12 |
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Alignment Details
Target: chr6 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 1 - 331
Target Start/End: Original strand, 5335866 - 5336196
Alignment:
| Q |
1 |
agctcagttagtagggacattgtagaatataggcaggtgcggagattgaaactcgaacatcccattaattcaccttaaaaaagtgaatttctaactcaag |
100 |
Q |
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| T |
5335866 |
agctcagttagtagggacattgtagaatatatgcaggggcggagattgaaactcgaacatcccattaattcaccttaaaaaagtgaatttctaactcaag |
5335965 |
T |
|
| Q |
101 |
agaatgaagggtttttaggatatctccttcgagaacagatttacaaatacagattgggaaaactctaccccatcttcaactcaaattcctatcctaggag |
200 |
Q |
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| T |
5335966 |
agaatgaagggtgtttaggatatctctttcgagaacggatttacaaatacagattgggaaaactctaccccatcttcaactcaaattcctgtcctaggag |
5336065 |
T |
|
| Q |
201 |
agctccattctcaagacaattcagtcctctctctttcttaccaggtgacaaagcagaatcccccagataactagtatttttgtatgagccgtacgagatg |
300 |
Q |
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| T |
5336066 |
agctccattctcaagacaattcagtcctctctctttcttaccaggcgacaaagcagaatcccccagataactagtatttttgtatgagccgtacgagatt |
5336165 |
T |
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| Q |
301 |
atattctcatatacggttctcagggtgtcct |
331 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
5336166 |
atattctcatatacggttctcagggtgtcct |
5336196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 267 - 325
Target Start/End: Original strand, 18336924 - 18336982
Alignment:
| Q |
267 |
ataactagtatttttgtatgagccgtacgagatgatattctcatatacggttctcaggg |
325 |
Q |
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| T |
18336924 |
ataactggtatttttgtttgagccgtacgagatgaaattctcatatacggttctcaggg |
18336982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 47; Significance: 9e-18; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 267 - 325
Target Start/End: Complemental strand, 26614450 - 26614392
Alignment:
| Q |
267 |
ataactagtatttttgtatgagccgtacgagatgatattctcatatacggttctcaggg |
325 |
Q |
| |
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|||||| |||||||||| ||||||||||||||||| ||||||||||||||||||||||| |
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| T |
26614450 |
ataactggtatttttgtttgagccgtacgagatgaaattctcatatacggttctcaggg |
26614392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 280 - 325
Target Start/End: Complemental strand, 23927236 - 23927191
Alignment:
| Q |
280 |
ttgtatgagccgtacgagatgatattctcatatacggttctcaggg |
325 |
Q |
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|||| ||||||||||||||||| |||||||||||||||||| |||| |
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| T |
23927236 |
ttgtttgagccgtacgagatgaaattctcatatacggttcttaggg |
23927191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 270 - 321
Target Start/End: Complemental strand, 13090279 - 13090228
Alignment:
| Q |
270 |
actagtatttttgtatgagccgtacgagatgatattctcatatacggttctc |
321 |
Q |
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|||||||||||||| |||| | |||||||||| ||||||||||||||||||| |
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| T |
13090279 |
actagtatttttgtttgagtcatacgagatgaaattctcatatacggttctc |
13090228 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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