View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18957_low_13 (Length: 343)
Name: NF18957_low_13
Description: NF18957
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18957_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 1241905 - 1242143
Alignment:
| Q |
1 |
cagctgcaagcaacttcgtcttctgctcagtaattagaaaaattaggaacattccaatcattgccttccaatcattaccaacaattcctttttctattag |
100 |
Q |
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| T |
1241905 |
cagctgcaagcaacttcgtattctgctcagtaattagaaaaattaggaacattccaatcattgccttccaatcattaccaacaattcctttttctattag |
1242004 |
T |
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| Q |
101 |
ataccagatcatgtgcgttggaaaggattttgttgtgtctagtgtgtccacaaaaggtttaaaatatgtgatttcttgaagttgaagtttcagatgaaac |
200 |
Q |
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| T |
1242005 |
ataccagatcatgtgcgttggagaggattttgttgtgtcta--gtgtccacaaaaggtttaaaatatgtgatttcttgaagttgaagtttcagatgaaac |
1242102 |
T |
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| Q |
201 |
caatggccaaggaaaaatgtaaaaagacatgaaacataaat |
241 |
Q |
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| T |
1242103 |
caatggccaaggaaaaatgtaaaaagacatgaaacataaat |
1242143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 267 - 341
Target Start/End: Original strand, 1242140 - 1242211
Alignment:
| Q |
267 |
aaatgtgagaaagcatgccataaatttcatgatgagaacccaggcattttgcaaaggataggatgatgtccatct |
341 |
Q |
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| T |
1242140 |
aaatgtgagaaagcatgccataaatttc---atgagaacccaagcattttgcaaaggatagaaagatgtgcatct |
1242211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 113; Significance: 4e-57; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 1 - 253
Target Start/End: Original strand, 472451 - 472715
Alignment:
| Q |
1 |
cagctgcaagcaacttcgtcttctgctcagtaattagaaaaattaggaacattccaatcattgccttcc----aatcat---------taccaacaattc |
87 |
Q |
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| T |
472451 |
cagctgcaagcaacttctccttctgctcagtaattagaaaaattaggaacattccaatcattgcattttgttgaatagtattactacataccaacaattc |
472550 |
T |
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| Q |
88 |
ctttttctat--tagataccagatcatgtgcgttggaaaggattttgttgtgtctagtgtgtccacaaaaggtttaaaatatgtgatttcttgaagttga |
185 |
Q |
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|||||||||| |||||| |||| |||| |||||| |||||||||||||||||||||| |||||||||||||||||| | ||||||||||||||||| |
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| T |
472551 |
ctttttctatattagatatcagaa-atgttagttggagaggattttgttgtgtctagtgt--ccacaaaaggtttaaaatctatgatttcttgaagttga |
472647 |
T |
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| Q |
186 |
agtttcagatgaaaccaatggccaaggaaaaatgtaaaaagacatgaaacataaataactgtatagaa |
253 |
Q |
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| T |
472648 |
agtttcacatgaaacccatggctaaggaaaaatgtaaaaagacatgaaaaataaataaccgtatagaa |
472715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 99; Significance: 8e-49; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 117 - 270
Target Start/End: Complemental strand, 41522034 - 41521883
Alignment:
| Q |
117 |
gttggaaaggattttgttgtgtctagtgtgtccacaaaaggtttaaaatatgtgatttcttgaagttgaagtttcagatgaaaccaatggccaaggaaaa |
216 |
Q |
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| T |
41522034 |
gttggagaggattttgttgtgtctagtgt--ccacaaaaggtttaaaatctatgatttcttgaagttgaagtttcacatgaaacccatggctaaggaaaa |
41521937 |
T |
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| Q |
217 |
atgtaaaaagacatgaaacataaataactgtatagaacctagtactattgaaat |
270 |
Q |
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| T |
41521936 |
atgtcaaaagacatgaaaaataaataaccgtatagaaccaagtaccattgaaat |
41521883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 5 - 64
Target Start/End: Complemental strand, 41526795 - 41526736
Alignment:
| Q |
5 |
tgcaagcaacttcgtcttctgctcagtaattagaaaaattaggaacattccaatcattgc |
64 |
Q |
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| T |
41526795 |
tgcaagcaacttctccttctgctcagtaattagaaaaattaggaacattccaatcattgc |
41526736 |
T |
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