View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18957_low_14 (Length: 328)
Name: NF18957_low_14
Description: NF18957
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18957_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 296; Significance: 1e-166; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 15 - 310
Target Start/End: Complemental strand, 2919525 - 2919230
Alignment:
| Q |
15 |
cataggatattgaccaacataaccatgataaggcttcttagacacattgagtagcttggtttctaaagggagatcaaagagctcttgtagtgaagcaaat |
114 |
Q |
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| T |
2919525 |
cataggatattgaccaacataaccatgataaggcttcttagacacattgagtagcttggtttctaaagggagatcaaagagctcttgtagtgaagcaaat |
2919426 |
T |
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| Q |
115 |
atggctttgcgaaggtctaaaggaactttatcaaaaactgcttcaaagcaaccatactctactaatgccttatagacttgggacttcactaactcccaat |
214 |
Q |
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| T |
2919425 |
atggctttgcgaaggtctaaaggaactttatcaaaaactgcttcaaagcaaccatactctactaatgccttatagacttgggacttcactaactcccaat |
2919326 |
T |
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| Q |
215 |
taggactcttggcttccaagttgaggttattgaagtcaattattggaagctttggggtggcttctgtgcccatattttcaattttccttccctaat |
310 |
Q |
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| T |
2919325 |
taggactcttggcttccaagttgaggttattgaagtcaattattggaagctttggggtggcttctgtgcccatattttcaattttccttccctaat |
2919230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 18 - 310
Target Start/End: Complemental strand, 2934312 - 2934020
Alignment:
| Q |
18 |
aggatattgaccaacataaccatgataaggcttcttagacacattgagtagcttggtttctaaagggagatcaaagagctcttgtagtgaagcaaatatg |
117 |
Q |
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|||||||||||||| ||| |||| ||||||||| |||||||||||||||||||| || ||||||||||||||||||||||||| || ||||| ||||||| |
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| T |
2934312 |
aggatattgaccaatatagccatcataaggcttattagacacattgagtagcttagtctctaaagggagatcaaagagctcttctattgaagtaaatatg |
2934213 |
T |
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| Q |
118 |
gctttgcgaaggtctaaaggaactttatcaaaaactgcttcaaagcaaccatactctactaatgccttatagacttgggacttcactaactcccaattag |
217 |
Q |
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| T |
2934212 |
gctttgcgaaggtctaaaggaactttatcaaaaattgcttcaaagcaaccatactctactaatgccttatagacttgggacttcactaactcccaattgg |
2934113 |
T |
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| Q |
218 |
gactcttggcttccaagttgaggttattgaagtcaattattggaagctttggggtggcttctgtgcccatattttcaattttccttccctaat |
310 |
Q |
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|| | |||||||| ||||||||||||||||||||||||| |||||||||| | ||| ||||| |||||||||||| | |||||||||||| |
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| T |
2934112 |
gatttttggcttcaaagttgaggttattgaagtcaattagtggaagcttttgagtgtgttctgatcccatattttcacctgtccttccctaat |
2934020 |
T |
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