View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18957_low_15 (Length: 327)

Name: NF18957_low_15
Description: NF18957
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18957_low_15
NF18957_low_15
[»] chr1 (28 HSPs)
chr1 (19-316)||(8873737-8874037)
chr1 (19-316)||(8964653-8964953)
chr1 (58-316)||(8999804-9000065)
chr1 (19-314)||(9096478-9096776)
chr1 (19-314)||(9104660-9104958)
chr1 (19-293)||(9082208-9082485)
chr1 (17-305)||(9056713-9057004)
chr1 (164-305)||(9142688-9142829)
chr1 (164-316)||(9152242-9152394)
chr1 (157-306)||(9350370-9350519)
chr1 (164-306)||(9320053-9320195)
chr1 (164-287)||(9254845-9254968)
chr1 (214-287)||(9399802-9399875)
chr1 (214-254)||(9486056-9486096)
chr1 (164-275)||(9453641-9453752)
chr1 (197-288)||(11033350-11033441)
chr1 (164-305)||(9318107-9318248)
chr1 (214-287)||(9432704-9432777)
chr1 (196-288)||(11011059-11011151)
chr1 (197-295)||(11004872-11004970)
chr1 (208-272)||(9464303-9464367)
chr1 (208-272)||(9488735-9488799)
chr1 (164-288)||(10914758-10914882)
chr1 (164-254)||(8956226-8956316)
chr1 (35-92)||(8956391-8956448)
chr1 (223-288)||(10903595-10903660)
chr1 (223-288)||(10979493-10979558)
chr1 (164-288)||(11007897-11008021)
[»] chr3 (1 HSPs)
chr3 (164-287)||(9159762-9159885)
[»] chr6 (1 HSPs)
chr6 (214-287)||(15927063-15927136)


Alignment Details
Target: chr1 (Bit Score: 227; Significance: 1e-125; HSPs: 28)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 19 - 316
Target Start/End: Original strand, 8873737 - 8874037
Alignment:
Q  19 aatgtggtgcaattaattggattttgcactgatcaatcaaaacgtgctcttgtttatgagtttatgcctaatggatccctcgataagtttattttcacta 118  Q
    ||||||||||||||||||||||||||||| ||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  8873737 aatgtggtgcaattaattggattttgcaccgagggatcaaaacgtgctcttgtttatgagtttatgcctaatggatccctcgataagtttattttctcta 8873836  T
Q  119 aag---gaagcgtgaatataagctatagccaaatttttgatatatcggttggagtagctcgtgggattgcttatctccaccatggatgcgaaatgaagat 215  Q
    |||   |||| || |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||    
T  8873837 aagaaggaagtgtaaatataagctatagccaaatttttgaaatatcggttggagtagctcgtgggattgcttatctccatcatggatgtgaaatgaagat 8873936  T
Q  216 tttgcattttgatattaagcctcacaacattcttcttgatgagaacttcaccccaaaagtctctgactttggattggctaagctatatcctgtagagaat 315  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||| || || |||||||||||||||||||||||||||||||||||||| ||||||    
T  8873937 tttgcattttgatattaagcctcacaacatccttcttgatgagaactttactccgaaagtctctgactttggattggctaagctatatcctgtggagaat 8874036  T
Q  316 a 316  Q
    |    
T  8874037 a 8874037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 19 - 316
Target Start/End: Complemental strand, 8964953 - 8964653
Alignment:
Q  19 aatgtggtgcaattaattggattttgcactgatcaatcaaaacgtgctcttgtttatgagtttatgcctaatggatccctcgataagtttattttcacta 118  Q
    |||||||||||||||||||| |||||    ||   |||||| ||||||||||||||||| || ||| ||||||||||||| ||||| ||||||||| |||    
T  8964953 aatgtggtgcaattaattggtttttgtgtcgagggatcaaaccgtgctcttgtttatgaattcatgtctaatggatcccttgataaatttattttctcta 8964854  T
Q  119 aagga---agcgtgaatataagctatagccaaatttttgatatatcggttggagtagctcgtgggattgcttatctccaccatggatgcgaaatgaagat 215  Q
    ||| |   ||| | |||||||||||| ||||||||||||| || ||||||||| |||||||||||||||||||||| |||||||||||||||||||||||    
T  8964853 aagaaggtagcataaatataagctatggccaaatttttgaaatttcggttggaatagctcgtgggattgcttatcttcaccatggatgcgaaatgaagat 8964754  T
Q  216 tttgcattttgatattaagcctcacaacattcttcttgatgagaacttcaccccaaaagtctctgactttggattggctaagctatatcctgtagagaat 315  Q
    |||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8964753 tttgcattttgatattaagcctcacaacatccttcttgatgagaatttcaccccaaaagtctctgactttggattggctaagctatatcctgtagagaat 8964654  T
Q  316 a 316  Q
    |    
T  8964653 a 8964653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 176; E-Value: 8e-95
Query Start/End: Original strand, 58 - 316
Target Start/End: Complemental strand, 9000065 - 8999804
Alignment:
Q  58 aaacgtgctcttgtttatgagtttatgcctaatggatccctcgataagtttattttcactaaag---gaagcgtgaatataagctatagccaaatttttg 154  Q
    |||||||||||||||||||| || |||||||||||||| || ||||| ||||||||| ||||||   |||| || |||||||||||||||||||||||||    
T  9000065 aaacgtgctcttgtttatgaattcatgcctaatggatcacttgataaatttattttctctaaagaaggaagtgtaaatataagctatagccaaatttttg 8999966  T
Q  155 atatatcggttggagtagctcgtgggattgcttatctccaccatggatgcgaaatgaagattttgcattttgatattaagcctcacaacattcttcttga 254  Q
    | ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| ||||||||    
T  8999965 acatatcagttggagtagctcgtgggattgcttatctccaccatggatgcgaaatgaagattttacattttgatatcaagcctcacaacatccttcttga 8999866  T
Q  255 tgagaacttcaccccaaaagtctctgactttggattggctaagctatatcctgtagagaata 316  Q
    ||| |||||||| ||||||||||||||||| |||||||||||||||||||| || |||||||    
T  8999865 tgaaaacttcacaccaaaagtctctgacttcggattggctaagctatatcccgtggagaata 8999804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 19 - 314
Target Start/End: Original strand, 9096478 - 9096776
Alignment:
Q  19 aatgtggtgcaattaattggattttgcactgatcaatcaaaacgtgctcttgtttatgagtttatgcctaatggatccctcgataagtttattttcacta 118  Q
    ||||| || |||||| |||||||||| | |||   |||||||||||||||||||||||| || |||||||||||||| || ||||| ||||||||| | |    
T  9096478 aatgtagtacaattatttggattttgtattgagggatcaaaacgtgctcttgtttatgaattcatgcctaatggatctcttgataaatttattttctcca 9096577  T
Q  119 aagga---agcgtgaatataagctatagccaaatttttgatatatcggttggagtagctcgtgggattgcttatctccaccatggatgcgaaatgaagat 215  Q
    ||| |   ||| | ||| ||||||| | | ||||||  |||||| |  |||||||||||||||||||||||||||| ||||| ||||| |||||||||||    
T  9096578 aagaagggagcataaatttaagctacaacaaaatttacgatatagcaattggagtagctcgtgggattgcttatcttcaccacggatgtgaaatgaagat 9096677  T
Q  216 tttgcattttgatattaagcctcacaacattcttcttgatgagaacttcaccccaaaagtctctgactttggattggctaagctatatcctgtagagaa 314  Q
    ||| ||||||||||| ||||| ||||| || ||||||||||||||||| | ||| ||| | ||||||||||||||||| |||||| ||||  |||||||    
T  9096678 tttacattttgatatcaagccccacaatatccttcttgatgagaactttatccctaaactatctgactttggattggcaaagctacatccaatagagaa 9096776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 19 - 314
Target Start/End: Original strand, 9104660 - 9104958
Alignment:
Q  19 aatgtggtgcaattaattggattttgcactgatcaatcaaaacgtgctcttgtttatgagtttatgcctaatggatccctcgataagtttattttcacta 118  Q
    ||||| || |||||| |||||||||| | |||   |||||||||||||||||||||||| || |||||||||||||| || ||||| ||||||||| | |    
T  9104660 aatgtagtacaattatttggattttgtattgagggatcaaaacgtgctcttgtttatgaattcatgcctaatggatctcttgataaatttattttctcca 9104759  T
Q  119 aagga---agcgtgaatataagctatagccaaatttttgatatatcggttggagtagctcgtgggattgcttatctccaccatggatgcgaaatgaagat 215  Q
    ||| |   ||| | ||| ||||||| | | ||||||  |||||| |  |||||||||||||||||||||||||||| ||||| ||||| |||||||||||    
T  9104760 aagaagggagcataaatttaagctacaacaaaatttacgatatagcaattggagtagctcgtgggattgcttatcttcaccacggatgtgaaatgaagat 9104859  T
Q  216 tttgcattttgatattaagcctcacaacattcttcttgatgagaacttcaccccaaaagtctctgactttggattggctaagctatatcctgtagagaa 314  Q
    ||| ||||||||||| ||||| ||||| || ||||||||||||||||| | ||| ||| | ||||||||||||||||| |||||| ||||  |||||||    
T  9104860 tttacattttgatatcaagccccacaatatccttcttgatgagaactttatccctaaactatctgactttggattggcaaagctacatccaatagagaa 9104958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 19 - 293
Target Start/End: Original strand, 9082208 - 9082485
Alignment:
Q  19 aatgtggtgcaattaattggattttgcactgatcaatcaaaacgtgctcttgtttatgagtttatgcctaatggatccctcgataagtttattttcacta 118  Q
    ||||| || |||||| |||||||||||| |||   ||| |||||||||||||||||||| || |||||||||||||| || ||||| ||||||||| |||    
T  9082208 aatgttgtacaattacttggattttgcattgagggatccaaacgtgctcttgtttatgaattcatgcctaatggatctcttgataaatttattttctcta 9082307  T
Q  119 aagga---agcgtgaatataagctatagccaaatttttgatatatcggttggagtagctcgtgggattgcttatctccaccatggatgcgaaatgaagat 215  Q
    ||| |   ||| | ||| ||||||| | | ||||||  |||||| |  |||||||||||||||||||||||||||| ||||||||||| |||||||||||    
T  9082308 aagaagggagcataaatttaagctacaacaaaatttacgatatagcaattggagtagctcgtgggattgcttatcttcaccatggatgtgaaatgaagat 9082407  T
Q  216 tttgcattttgatattaagcctcacaacattcttcttgatgagaacttcaccccaaaagtctctgactttggattggc 293  Q
    ||| ||||||||||| ||||| ||||| ||  | |||||||||||||| | ||| ||| | |||||||||||||||||    
T  9082408 tttacattttgatatcaagccccacaatatcttgcttgatgagaactttatccctaaaatatctgactttggattggc 9082485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 17 - 305
Target Start/End: Complemental strand, 9057004 - 9056713
Alignment:
Q  17 taaatgtggtgcaattaattggattttgcactgatcaatcaaaacgtgctcttgtttatgagtttatgcctaatggatccctcgataagtttattttcac 116  Q
    |||||||||| |||||| |||||||||||| |||    |||||||| |||||||||||||| ||||||| ||||||||| || ||||| | ||||||| |    
T  9057004 taaatgtggttcaattacttggattttgcattgaggggtcaaaacgagctcttgtttatgaatttatgcgtaatggatctcttgataaatatattttctc 9056905  T
Q  117 taaagga---agcgtgaatataagctatagccaaatttttgatatatcggttggagtagctcgtgggattgcttatctccaccatggatgcgaaatgaag 213  Q
    ||||| |   ||  | ||| ||||||| | |||| |    ||||| ||  ||||||||||||||||||||| |||||||||  ||||||| ||||||||     
T  9056904 taaagaagggagtataaatttaagctacaaccaattgcacgatatttcaattggagtagctcgtgggattgattatctccataatggatgtgaaatgaaa 9056805  T
Q  214 attttgcattttgatattaagcctcacaacattcttcttgatgagaacttcaccccaaaagtctctgactttggattggctaagctatatcc 305  Q
    ||||||||||||||||| ||||| ||||| || || ||||| ||||| || |  |||||  | |||||||||||| | || |||||||||||    
T  9056804 attttgcattttgatatcaagccacacaatatcctacttgacgagaattttattccaaagatatctgactttggactcgcaaagctatatcc 9056713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 164 - 305
Target Start/End: Original strand, 9142688 - 9142829
Alignment:
Q  164 ttggagtagctcgtgggattgcttatctccaccatggatgcgaaatgaagattttgcattttgatattaagcctcacaacattcttcttgatgagaactt 263  Q
    ||||||||||||| || ||||||||||||||||||||||| ||||||||||| || ||||||||||| ||||| || || ||||| ||||||||||||||    
T  9142688 ttggagtagctcgaggaattgcttatctccaccatggatgtgaaatgaagatattacattttgatatcaagccccataatattctgcttgatgagaactt 9142787  T
Q  264 caccccaaaagtctctgactttggattggctaagctatatcc 305  Q
     |  |||||  | |||||||||||| | || |||||||||||    
T  9142788 tattccaaagatatctgactttggactcgcaaagctatatcc 9142829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 164 - 316
Target Start/End: Original strand, 9152242 - 9152394
Alignment:
Q  164 ttggagtagctcgtgggattgcttatctccaccatggatgcgaaatgaagattttgcattttgatattaagcctcacaacattcttcttgatgagaactt 263  Q
    ||||| ||| ||| || ||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||| ||||| ||||   | |||||||||||    
T  9152242 ttggactaggtcgaggaattgcttatctccaccatggatgtgaaatgaagattttacattttgatatcaagccccacaatattcggttagatgagaactt 9152341  T
Q  264 caccccaaaagtctctgactttggattggctaagctatatcctgtagagaata 316  Q
     | |||| |  | | |||||||||| | || |||||||||||  |||||||||    
T  9152342 tatcccatagatttttgactttggactcgcaaagctatatccgctagagaata 9152394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 157 - 306
Target Start/End: Complemental strand, 9350519 - 9350370
Alignment:
Q  157 atatcggttggagtagctcgtgggattgcttatctccaccatggatgcgaaatgaagattttgcattttgatattaagcctcacaacattcttcttgatg 256  Q
    ||||| |||||||| |||||||| || |||||| | || || ||||| || ||| | ||||||||||||||||| ||||| || ||||| ||||||||||    
T  9350519 atatctgttggagtggctcgtggtatggcttatttacatcaaggatgtgacatgcaaattttgcattttgatatcaagccccataacatccttcttgatg 9350420  T
Q  257 agaacttcaccccaaaagtctctgactttggattggctaagctatatcct 306  Q
    ||||||| | ||| ||||| || ||||||||  | |||||||| ||||||    
T  9350419 agaactttatccccaaagtttcagactttggtcttgctaagctttatcct 9350370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 164 - 306
Target Start/End: Complemental strand, 9320195 - 9320053
Alignment:
Q  164 ttggagtagctcgtgggattgcttatctccaccatggatgcgaaatgaagattttgcattttgatattaagcctcacaacattcttcttgatgagaactt 263  Q
    ||||||| |||||||| || |||||| | || || ||||| || ||| | ||||||||||||||||| ||||| || ||||| |||||||||||||||||    
T  9320195 ttggagtggctcgtggtatggcttatttacatcaaggatgtgacatgcaaattttgcattttgatatcaagccccataacatccttcttgatgagaactt 9320096  T
Q  264 caccccaaaagtctctgactttggattggctaagctatatcct 306  Q
     | ||| ||||| || ||||||||  | |||||||| ||||||    
T  9320095 tatccccaaagtttcagactttggtcttgctaagctttatcct 9320053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 164 - 287
Target Start/End: Original strand, 9254845 - 9254968
Alignment:
Q  164 ttggagtagctcgtgggattgcttatctccaccatggatgcgaaatgaagattttgcattttgatattaagcctcacaacattcttcttgatgagaactt 263  Q
    ||||||| |||| ||| ||||||||| | || || |||||||||||| | |||||||||||||| || ||||| || ||||| ||||| |||||||||||    
T  9254845 ttggagtggctcatggtattgcttatttacatcaaggatgcgaaatgcaaattttgcattttgacatcaagccccataacatccttctcgatgagaactt 9254944  T
Q  264 caccccaaaagtctctgactttgg 287  Q
     | ||| ||||| || ||||||||    
T  9254945 taaccccaaagtttcagactttgg 9254968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 214 - 287
Target Start/End: Complemental strand, 9399875 - 9399802
Alignment:
Q  214 attttgcattttgatattaagcctcacaacattcttcttgatgagaacttcaccccaaaagtctctgactttgg 287  Q
    |||||||||||||||||||||||||||||||| |||||||| || || |||| ||| ||||| || ||||||||    
T  9399875 attttgcattttgatattaagcctcacaacatccttcttgacgaaaatttcatccctaaagtttcggactttgg 9399802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 214 - 254
Target Start/End: Original strand, 9486056 - 9486096
Alignment:
Q  214 attttgcattttgatattaagcctcacaacattcttcttga 254  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  9486056 attttgcattttgatattaagcctcacaacattcttcttga 9486096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 164 - 275
Target Start/End: Original strand, 9453641 - 9453752
Alignment:
Q  164 ttggagtagctcgtgggattgcttatctccaccatggatgcgaaatgaagattttgcattttgatattaagcctcacaacattcttcttgatgagaactt 263  Q
    ||||||| |||||||| ||| | ||||| || || || || || ||| | |||||||||||||||||||||||||||||||| |||||||| || || ||    
T  9453641 ttggagtggctcgtggaatttcatatcttcatcaagggtgtgatatgcaaattttgcattttgatattaagcctcacaacatccttcttgacgaaaattt 9453740  T
Q  264 caccccaaaagt 275  Q
    || ||| |||||    
T  9453741 catccctaaagt 9453752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 197 - 288
Target Start/End: Complemental strand, 11033441 - 11033350
Alignment:
Q  197 atggatgcgaaatgaagattttgcattttgatattaagcctcacaacattcttcttgatgagaacttcaccccaaaagtctctgactttgga 288  Q
    |||||||||| ||||| ||| | || ||||| || |||||||| ||||| |||||||||||||| |||| ||||||||| ||||| ||||||    
T  11033441 atggatgcgatatgaaaattctacactttgacataaagcctcataacatccttcttgatgagaatttcaacccaaaagtttctgattttgga 11033350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 164 - 305
Target Start/End: Original strand, 9318107 - 9318248
Alignment:
Q  164 ttggagtagctcgtgggattgcttatctccaccatggatgcgaaatgaagattttgcattttgatattaagcctcacaacattcttcttgatgagaactt 263  Q
    ||||||| |||||||| ||||||||| | ||  | ||||| || ||| | || |||||||||||||| ||||| || ||||| |||||||||||||||||    
T  9318107 ttggagtggctcgtggaattgcttatttgcatgaaggatgtgacatgcaaatcttgcattttgatatcaagccccataacatccttcttgatgagaactt 9318206  T
Q  264 caccccaaaagtctctgactttggattggctaagctatatcc 305  Q
     |  || ||||| || ||||||||  |||| ||||| |||||    
T  9318207 tattcccaaagtttcagactttggtctggcaaagctttatcc 9318248  T

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Target: chr1; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 214 - 287
Target Start/End: Original strand, 9432704 - 9432777
Alignment:
Q  214 attttgcattttgatattaagcctcacaacattcttcttgatgagaacttcaccccaaaagtctctgactttgg 287  Q
    |||||||||||||||||||||||||||||||| ||||| || || || |||| ||| ||||| || ||||||||    
T  9432704 attttgcattttgatattaagcctcacaacatccttctggacgaaaatttcatccctaaagtttcggactttgg 9432777  T

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Target: chr1; HSP #19
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 196 - 288
Target Start/End: Complemental strand, 11011151 - 11011059
Alignment:
Q  196 catggatgcgaaatgaagattttgcattttgatattaagcctcacaacattcttcttgatgagaacttcaccccaaaagtctctgactttgga 288  Q
    ||||||||| | ||||| ||| | || |||||||| |||||||| ||||||||||||||||| || ||||  |||||||| ||||| ||||||    
T  11011151 catggatgcaatatgaaaattctacactttgatataaagcctcataacattcttcttgatgaaaatttcaatccaaaagtttctgattttgga 11011059  T

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Target: chr1; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 197 - 295
Target Start/End: Original strand, 11004872 - 11004970
Alignment:
Q  197 atggatgcgaaatgaagattttgcattttgatattaagcctcacaacattcttcttgatgagaacttcaccccaaaagtctctgactttggattggcta 295  Q
    |||||||| | ||||| ||| | || |||||||| |||||||| ||||| ||||||||||| || ||||  |||||||| ||||| |||||||| ||||    
T  11004872 atggatgcaatatgaaaattctacactttgatataaagcctcataacatccttcttgatgaaaatttcaatccaaaagtttctgattttggattagcta 11004970  T

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Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 208 - 272
Target Start/End: Complemental strand, 9464367 - 9464303
Alignment:
Q  208 atgaagattttgcattttgatattaagcctcacaacattcttcttgatgagaacttcaccccaaa 272  Q
    |||| ||||||||||||||| || |||||||| |||||||||||||| |  |||||||| |||||    
T  9464367 atgaggattttgcattttgacataaagcctcataacattcttcttgacgtaaacttcactccaaa 9464303  T

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Target: chr1; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 208 - 272
Target Start/End: Complemental strand, 9488799 - 9488735
Alignment:
Q  208 atgaagattttgcattttgatattaagcctcacaacattcttcttgatgagaacttcaccccaaa 272  Q
    |||| ||||||||||||||| || |||||||| |||||||||||||| |  |||||||| |||||    
T  9488799 atgaggattttgcattttgacataaagcctcataacattcttcttgacgtaaacttcactccaaa 9488735  T

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Target: chr1; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 164 - 288
Target Start/End: Complemental strand, 10914882 - 10914758
Alignment:
Q  164 ttggagtagctcgtgggattgcttatctccaccatggatgcgaaatgaagattttgcattttgatattaagcctcacaacattcttcttgatgagaactt 263  Q
    ||||||| |||||||| ||||  ||  | ||| |||||||| | ||||| ||| | || |||||||| |||||||| ||||| ||||||||||| || ||    
T  10914882 ttggagtggctcgtggcattgagtacttgcacaatggatgcaatatgaaaattctacactttgatataaagcctcataacatccttcttgatgaaaattt 10914783  T
Q  264 caccccaaaagtctctgactttgga 288  Q
    ||  |||||||| ||||| ||||||    
T  10914782 caatccaaaagtttctgattttgga 10914758  T

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Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 164 - 254
Target Start/End: Complemental strand, 8956316 - 8956226
Alignment:
Q  164 ttggagtagctcgtgggattgcttatctccaccatggatgcgaaatgaagattttgcattttgatattaagcctcacaacattcttcttga 254  Q
    ||||||| || ||||| ||||||||| | || || || || || ||| | ||||| ||||||||||| |||||||| ||||||||||||||    
T  8956316 ttggagttgcacgtggaattgcttatttgcatcaaggttgtgacatgcaaattttacattttgatatcaagcctcataacattcttcttga 8956226  T

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Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 92
Target Start/End: Complemental strand, 8956448 - 8956391
Alignment:
Q  35 ttggattttgcactgatcaatcaaaacgtgctcttgtttatgagtttatgcctaatgg 92  Q
    |||||||||||| |||   |||||||||||||||||||||||| || ||||| |||||    
T  8956448 ttggattttgcattgagggatcaaaacgtgctcttgtttatgatttcatgcccaatgg 8956391  T

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Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 223 - 288
Target Start/End: Complemental strand, 10903660 - 10903595
Alignment:
Q  223 tttgatattaagcctcacaacattcttcttgatgagaacttcaccccaaaagtctctgactttgga 288  Q
    |||||||| |||||||| ||||||||||||||||| |  ||||  |||||||| ||||| ||||||    
T  10903660 tttgatataaagcctcataacattcttcttgatgaaagtttcaatccaaaagtttctgattttgga 10903595  T

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Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 223 - 288
Target Start/End: Complemental strand, 10979558 - 10979493
Alignment:
Q  223 tttgatattaagcctcacaacattcttcttgatgagaacttcaccccaaaagtctctgactttgga 288  Q
    |||||||| |||||||| ||||| ||||||||||| || ||||  |||||||| ||||| ||||||    
T  10979558 tttgatataaagcctcataacatccttcttgatgaaaatttcaatccaaaagtttctgattttgga 10979493  T

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Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 164 - 288
Target Start/End: Complemental strand, 11008021 - 11007897
Alignment:
Q  164 ttggagtagctcgtgggattgcttatctccaccatggatgcgaaatgaagattttgcattttgatattaagcctcacaacattcttcttgatgagaactt 263  Q
    ||||||| |||||||| ||||  ||  | ||| |||||||| | ||||| ||| | || ||||| || |||||||| ||||| ||||||||||| || ||    
T  11008021 ttggagtggctcgtggcattgagtacttgcacaatggatgcaatatgaaaattctacactttgacataaagcctcataacatccttcttgatgaaaattt 11007922  T
Q  264 caccccaaaagtctctgactttgga 288  Q
    ||  |||||||| ||||| ||||||    
T  11007921 caatccaaaagtttctgattttgga 11007897  T

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Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 164 - 287
Target Start/End: Complemental strand, 9159885 - 9159762
Alignment:
Q  164 ttggagtagctcgtgggattgcttatctccaccatggatgcgaaatgaagattttgcattttgatattaagcctcacaacattcttcttgatgagaactt 263  Q
    ||||||| |||||||| ||||||||| | || || ||||| || ||| | || |||||||||||||| ||||| || ||||| |||||||| ||||||||    
T  9159885 ttggagtggctcgtggaattgcttatttgcatcaaggatgtgacatgcaaatcttgcattttgatatcaagccccataacatacttcttgacgagaactt 9159786  T
Q  264 caccccaaaagtctctgactttgg 287  Q
     | ||| || || |||||||||||    
T  9159785 tatccccaaggtttctgactttgg 9159762  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 214 - 287
Target Start/End: Original strand, 15927063 - 15927136
Alignment:
Q  214 attttgcattttgatattaagcctcacaacattcttcttgatgagaacttcaccccaaaagtctctgactttgg 287  Q
    |||||||||||||| || ||||| || ||||| ||||||||||||||||| | ||| ||||| || ||||||||    
T  15927063 attttgcattttgacatcaagccccataacatccttcttgatgagaactttatccccaaagtttccgactttgg 15927136  T

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