View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18957_low_18 (Length: 278)
Name: NF18957_low_18
Description: NF18957
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18957_low_18 |
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Alignment Details
Target: chr2 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 14 - 260
Target Start/End: Complemental strand, 2816654 - 2816410
Alignment:
| Q |
14 |
ttcttcactgtatgagcattacaataattagaatctcaagtattgaatatgcaaaacttggacaaacaaagatcaaagctccatttttgtacatatgaaa |
113 |
Q |
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| T |
2816654 |
ttcttcactgtatgagcattacaataattagaatctcaagtattgaatatgcaaaacttggaccaacaaagatcaaagctccatttttgtacatatgaaa |
2816555 |
T |
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| Q |
114 |
tgaaattatatatcatgtgattatgtatgaggttatttttctaataaaatactccatttttgaagaaataccatcctatatatttgcgagcattcacaat |
213 |
Q |
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| T |
2816554 |
ttaaattatatatcatgtgattatgtatgaggttatttttctaataaaatactccatttttgaagaaataccatcctatata--tgcgagcattcacaat |
2816457 |
T |
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| Q |
214 |
cagttatcagccatttgcacttataacaacattgatattggctcact |
260 |
Q |
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| T |
2816456 |
cagttatcagccatttgcacttataacaacattgatattggctcact |
2816410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 80; Significance: 1e-37; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 96 - 260
Target Start/End: Original strand, 1425659 - 1425817
Alignment:
| Q |
96 |
atttttgtacatatgaaatgaaattatatatcatgtgattatgtatgaggttatttttctaataaaatactcca----tttttgaagaaataccatccta |
191 |
Q |
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| T |
1425659 |
atttttgtatatatgaaatgaaattatatatcatgtgattatgt----ggttattgttctaataaaagattccatttgtttttgaagaaataccatccta |
1425754 |
T |
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| Q |
192 |
tatatttgcgagcattcacaatcagttatcagccatttgcacttataacaacattgatattggctcact |
260 |
Q |
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| T |
1425755 |
------tgcgagcatttacaatctgttaccagccatttgcactaataacaacattgatattggctcact |
1425817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 14 - 96
Target Start/End: Original strand, 1423639 - 1423723
Alignment:
| Q |
14 |
ttcttcactgtatgagcattacaataattagaa-tctcaa-gtattgaatatgcaaaacttggacaaacaaagatcaaagctcca |
96 |
Q |
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||||||| |||||||||| | |||||||||||| ||| || | |||||||||||||||||||||| || ||||||||||| |||| |
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| T |
1423639 |
ttcttcagtgtatgagcactgcaataattagaaatcttaaagcattgaatatgcaaaacttggaccaagaaagatcaaagatcca |
1423723 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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