View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18957_low_21 (Length: 265)
Name: NF18957_low_21
Description: NF18957
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18957_low_21 |
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Alignment Details
Target: chr3 (Bit Score: 250; Significance: 1e-139; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 262
Target Start/End: Complemental strand, 38169924 - 38169663
Alignment:
| Q |
1 |
ctgagttgtagagaggaacttgagaataatatgaatgggaagataataaaatggtgtagtcaggtggaggttttgtcgcaccgttctttgggttgtttta |
100 |
Q |
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| T |
38169924 |
ctgagttgtagagaggaacttgagaataatatgaatgggaagatagtaaaatggtgtagtcaggtggaggttttgtcgcaccgttctttgggttgtttta |
38169825 |
T |
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| Q |
101 |
tgacgcattgtggatggaattcgactttggaaagtttgggttcaggggttcctatggttgcatttcctcagtggacagatcaaaccactaatgcgaagtt |
200 |
Q |
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| T |
38169824 |
tgacgcattgtggatggaattcgactttggaaagtttgggttcaggggttcctatggttgcatttcctcagtggacagatcaaaccactaatgcgaagtt |
38169725 |
T |
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| Q |
201 |
aattgaagatgtgtggaagactggggtgaggatggaacgtgatgaggaagggatggtgaaag |
262 |
Q |
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| T |
38169724 |
aattgaagatgtgtggaagactgggttgaggatggaacatgatgaggaagggatggtgaaag |
38169663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 4 - 265
Target Start/End: Complemental strand, 38179735 - 38179474
Alignment:
| Q |
4 |
agttgtagagaggaacttgagaataatatgaatgggaagataataaaatggtgtagtcaggtggaggttttgtcgcaccgttctttgggttgttttatga |
103 |
Q |
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| T |
38179735 |
agttgtagagaggagcttgagaggaatgttaatgggaagatagtgaaatggtgtagtcaggtggaggttttgtcgcaccgttctttaggttgttttatga |
38179636 |
T |
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| Q |
104 |
cgcattgtggatggaattcgactttggaaagtttgggttcaggggttcctatggttgcatttcctcagtggacagatcaaaccactaatgcgaagttaat |
203 |
Q |
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| T |
38179635 |
cgcattgtggatggaattcgactttggaaagtttaggttcaggggttcctatggttgcatttcctcagtggacagatcaaaccactaatgcaaagttaat |
38179536 |
T |
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| Q |
204 |
tgaagatgtgtggaagactggggtgaggatggaacgtgatgaggaagggatggtgaaagctg |
265 |
Q |
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| T |
38179535 |
tgaagatgtgtggaagactggggtgaggatggaatgtgatgaggaagggatggtgaaagctg |
38179474 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 4 - 250
Target Start/End: Complemental strand, 38184404 - 38184158
Alignment:
| Q |
4 |
agttgtagagaggaacttgagaataatatgaatgggaagataataaaatggtgtagtcaggtggaggttttgtcgcaccgttctttgggttgttttatga |
103 |
Q |
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| T |
38184404 |
agttgtagagaggaacttgagaggaatgttaatgggaagatagtgaaatggtgtagtcaggtggaggttttgtcgcaccgttctttgggttgttttatga |
38184305 |
T |
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| Q |
104 |
cgcattgtggatggaattcgactttggaaagtttgggttcaggggttcctatggttgcatttcctcagtggacagatcaaaccactaatgcgaagttaat |
203 |
Q |
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| T |
38184304 |
cgcattgtggatggaattcgactttggaaagtttgggttcaggggttcctatggtagcatttccccagtggacagatcaaactactaatgcaaagttaat |
38184205 |
T |
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| Q |
204 |
tgaagatgtgtggaagactggggtgaggatggaacgtgatgaggaag |
250 |
Q |
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| T |
38184204 |
tgaagatttgtggaagactgggttgagggtggaacgtgatgaggaag |
38184158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 88 - 230
Target Start/End: Original strand, 35060845 - 35060987
Alignment:
| Q |
88 |
ttgggttgttttatgacgcattgtggatggaattcgactttggaaagtttgggttcaggggttcctatggttgcatttcctcagtggacagatcaaacca |
187 |
Q |
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| T |
35060845 |
ttgggttgttttttgactcattgtggttggaactcgactttggaaagtttggtatctggggttccactagtggcatttcctcaatggactgatcaaaaga |
35060944 |
T |
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| Q |
188 |
ctaatgcgaagttaattgaagatgtgtggaagactggggtgag |
230 |
Q |
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| T |
35060945 |
ctaatgcaaaactaattgaagatgtgtggaagataggggtgag |
35060987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 88 - 220
Target Start/End: Original strand, 35054107 - 35054239
Alignment:
| Q |
88 |
ttgggttgttttatgacgcattgtggatggaattcgactttggaaagtttgggttcaggggttcctatggttgcatttcctcagtggacagatcaaacca |
187 |
Q |
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| T |
35054107 |
ttgggttgttttttgacacactgtggttggaattcaactttggaaagcttggtaaaaggggttcctatggtggcgtttccacaatggacagatcagatga |
35054206 |
T |
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| Q |
188 |
ctaatgcgaagttaattgaagatgtgtggaaga |
220 |
Q |
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||||||| ||||||||||||||||||||||||| |
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| T |
35054207 |
ctaatgcaaagttaattgaagatgtgtggaaga |
35054239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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