View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18957_low_25 (Length: 251)
Name: NF18957_low_25
Description: NF18957
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18957_low_25 |
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Alignment Details
Target: chr1 (Bit Score: 180; Significance: 3e-97; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 27482333 - 27482568
Alignment:
| Q |
1 |
aaaattaattttactacaaatggaaatatgaaagtttattattactaaagaaacgtatcaagaaaacataaacaagtttnnnnnnnngtattcaatttaa |
100 |
Q |
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| T |
27482333 |
aaaattaattttactacaaatggaaatatgaaagtttattattactaaagaaacgtatcaagaaaacaaaaacaagtttaaaaaaaagtattcaatttaa |
27482432 |
T |
|
| Q |
101 |
cattaaactttacctgtccatatagtgttgcattaatagcacctgtatgcatatgagcagttccgtagataagataaccacctttttccatagggaaact |
200 |
Q |
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||| |||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
27482433 |
cataaaacgttacctgtctatatagtgttgcattaatagcacctgtatgcatatgagcagttccgtagataagataaccacctttttctatagggaaact |
27482532 |
T |
|
| Q |
201 |
agctttctgaacatggacagggtcactactattgtt |
236 |
Q |
| |
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|||||||||||||||||| ||||||| |||||||| |
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| T |
27482533 |
tgctttctgaacatggacatggtcactgctattgtt |
27482568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 27489528 - 27489768
Alignment:
| Q |
1 |
aaaattaattttactacaaatggaaatatgaaagtttattattactaaagaaacgtatcaagaaaacataaacaagtttnnnnnnnngtat-----tcaa |
95 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| | |||| |
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| T |
27489528 |
aaaattaattttactacaaatgaaaatatgaaagtttattattactaaagaaacgtatcaagaaaagataaacaggttttttataaaaaaaaaaaatcaa |
27489627 |
T |
|
| Q |
96 |
tttaacattaaactttacctgtccatatagtgttgcattaatagcacctgtatgcatatgagcagttccgtagataagataaccacctttttccataggg |
195 |
Q |
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|||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27489628 |
tttaacataaaactttacctgtccatataatgttgcattaatagcacctgtatgcatatgagcagttccgtagataagataaccacctttttccataggg |
27489727 |
T |
|
| Q |
196 |
aaactagctttctgaacatggacagggtcactactattgtt |
236 |
Q |
| |
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| T |
27489728 |
aaacttgctttctgaacatggatagggtcactactattgtt |
27489768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 102 - 218
Target Start/End: Original strand, 12599590 - 12599706
Alignment:
| Q |
102 |
attaaactttacctgtccatatagtgttgcattaatagcacctgtatgcatatgagcagttccgtagataagataaccacctttttccatagggaaacta |
201 |
Q |
| |
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|||||||||||||||||| |||| |||||||| || | |||||||| |||| ||| |||||||||||||||||||||| |||||||||| || |
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| T |
12599590 |
attaaactttacctgtccgtataatgttgcatcaacaatgcctgtatgtgcatgaccagaggcgtagataagataaccacctttctccatagggatgctt |
12599689 |
T |
|
| Q |
202 |
gctttctgaacatggac |
218 |
Q |
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| T |
12599690 |
gctttttgaacgtggac |
12599706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 61; Significance: 3e-26; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 102 - 236
Target Start/End: Complemental strand, 2309030 - 2308888
Alignment:
| Q |
102 |
attaaactttacctgtccatatagtgttgcattaatagcacctgtatgcatatgagcagttccgtag--ataagataaccacc------tttttccatag |
193 |
Q |
| |
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|||||||| |||||||||||||| ||||||||||| | ||||||||||||||||||||||||||||| |||||||||||||| ||||| |||| |
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| T |
2309030 |
attaaactatacctgtccatataatgttgcattaacaacacctgtatgcatatgagcagttccgtagatataagataaccaccattttttttttttatag |
2308931 |
T |
|
| Q |
194 |
ggaaactagctttctgaacatggacagggtcactactattgtt |
236 |
Q |
| |
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||| || ||||| ||||||| ||||||||||| ||||||||| |
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| T |
2308930 |
ggattcttgctttttgaacattgacagggtcaccactattgtt |
2308888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 109 - 185
Target Start/End: Complemental strand, 12017818 - 12017742
Alignment:
| Q |
109 |
tttacctgtccatatagtgttgcattaatagcacctgtatgcatatgagcagttccgtagataagataaccaccttt |
185 |
Q |
| |
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||||||||||| |||| ||||||||||||| ||||||||||| ||||| ||| |||||||||||||||||||||| |
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| T |
12017818 |
tttacctgtccgtataatgttgcattaataacacctgtatgcgtatgaccagaagcgtagataagataaccaccttt |
12017742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 102 - 217
Target Start/End: Original strand, 14623800 - 14623915
Alignment:
| Q |
102 |
attaaactttacctgtccatatagtgttgcattaatagcacctgtatgcatatgagcagttccgtagataagataaccacctttttccatagggaaacta |
201 |
Q |
| |
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|||||||||||||||||| |||| ||||||||||||| ||||||||||| |||| |||| |||||||||||||||||||||| | |||||||| || |
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| T |
14623800 |
attaaactttacctgtccgtataatgttgcattaataacacctgtatgcgcatgaccagtggcgtagataagataaccacctttcttcatagggatgctt |
14623899 |
T |
|
| Q |
202 |
gctttctgaacatgga |
217 |
Q |
| |
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||||| ||||| |||| |
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| T |
14623900 |
gctttttgaacgtgga |
14623915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 102 - 195
Target Start/End: Original strand, 34211257 - 34211350
Alignment:
| Q |
102 |
attaaactttacctgtccatatagtgttgcattaatagcacctgtatgcatatgagcagttccgtagataagataaccacctttttccataggg |
195 |
Q |
| |
|
|||||||||||||||||| |||| ||||||||||||| ||||||||||| |||| ||| ||||||||||||| |||||||||| ||||||| |
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| T |
34211257 |
attaaactttacctgtccgtataatgttgcattaataacacctgtatgcgcatgaccagaggcgtagataagatagccaccttttttcataggg |
34211350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 105 - 217
Target Start/End: Original strand, 34124003 - 34124115
Alignment:
| Q |
105 |
aaactttacctgtccatatagtgttgcattaatagcacctgtatgcatatgagcagttccgtagataagataaccacctttttccatagggaaactagct |
204 |
Q |
| |
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||||||||||||||| |||| | ||||||| ||| ||||| ||||| |||| ||| |||||||||||||||||||||| | |||||||| || ||| |
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| T |
34124003 |
aaactttacctgtccgtataatattgcattgataacacctctatgcgcatgaccagaggcgtagataagataaccacctttcttcatagggatgcttgct |
34124102 |
T |
|
| Q |
205 |
ttctgaacatgga |
217 |
Q |
| |
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|| ||||| |||| |
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| T |
34124103 |
ttttgaacgtgga |
34124115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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