View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18957_low_27 (Length: 248)
Name: NF18957_low_27
Description: NF18957
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18957_low_27 |
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Alignment Details
Target: chr5 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 15 - 237
Target Start/End: Original strand, 278254 - 278476
Alignment:
| Q |
15 |
cagtaaccacttttgactatatttccatgggtctttccatagattattccaaattcactccatgtacaacacaatctgatgaacaagttctagctagcaa |
114 |
Q |
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| T |
278254 |
cagtaaccacttttgactatatttccatgggtctttccatagattattccaaattcactccatgtacaacacaatctgatgaacaagttctagctaacaa |
278353 |
T |
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| Q |
115 |
aaatttgcaggcccgaaaaacggaacgtgaaatactagtttctgaaccagaagaggataaaaccacaagcaaagaaaattcaggaaaaagatctaggagc |
214 |
Q |
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| T |
278354 |
aaatttgcaggcccgaaaaacggaacgtgaaatactagtttctgaaccagaagaggataaaaccacaagcacagaaaattcaggaaaaagatctaggagc |
278453 |
T |
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| Q |
215 |
tcaaatgaggtaacaaacagaag |
237 |
Q |
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| T |
278454 |
tcaaatgaggtaacaaacagaag |
278476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 60 - 226
Target Start/End: Complemental strand, 41800363 - 41800197
Alignment:
| Q |
60 |
attccaaattcactccatgtacaacacaatctgatgaa--caagttctagctagcaaaaatttgcaggcccgaaaaacggaacgtgaaatactagtttct |
157 |
Q |
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| T |
41800363 |
attccaaattcactccatatacaaccgaacccgacgagagcaagttctagctgccaagaatttgcaggcccaaaa---ggaacgtgaaatactagtttct |
41800267 |
T |
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| Q |
158 |
gaaccagaagaggataaaaccacaagcaaagaaaattcagga-aaaagatctaggagctcaaatgaggta |
226 |
Q |
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| T |
41800266 |
gaactagaagaagataaaacaagaagcacagaaaattcaggaaaaaagatgtaggagctcaaacgaggta |
41800197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 136 - 239
Target Start/End: Complemental strand, 24685478 - 24685374
Alignment:
| Q |
136 |
ggaacgtgaaatactagtttctgaaccagaagaggataaaaccacaagcaaagaaaattcaggaaaaagatctaggagctcaaatgaggta-acaaacag |
234 |
Q |
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||||| ||| ||||||||||||| |||| ||| |||||||||| ||||| ||| ||||||||||||||| |||||||||| | ||||||| ||||||| |
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| T |
24685478 |
ggaacatgacatactagtttctggaccacgagatgataaaaccagaagcagagagaattcaggaaaaagacctaggagctcgactgaggtagacaaacaa |
24685379 |
T |
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| Q |
235 |
aagcc |
239 |
Q |
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||||| |
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| T |
24685378 |
aagcc |
24685374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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