View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18957_low_29 (Length: 237)
Name: NF18957_low_29
Description: NF18957
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18957_low_29 |
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Alignment Details
Target: chr6 (Bit Score: 223; Significance: 1e-123; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 5335814 - 5335592
Alignment:
| Q |
1 |
taccgtcccaagatataaactttttgccgacttcaacttccaacctctgttcaatttgatcttttaaatcttaataatgttttgctcagcaattaataaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5335814 |
taccgtcccaagatataaactttttgccgacttcaacttccaacctctgttcaatttgatcttttaaatcttaataatgttttgctcagcaattaataaa |
5335715 |
T |
|
| Q |
101 |
aaagtagactaattttaaattaaaatgagactactgtaaggatgatatacgttatatcgcttttaacaaaatcaatcacatgagctgcatctaagaaaca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5335714 |
aaagtagactaattttaaattaaaatgagactactgtaaggatgatatacgttatatcgcttttaacaaaatcaatcacatgagctgcatctaagaaaca |
5335615 |
T |
|
| Q |
201 |
agcaaccttcctataaccaaaat |
223 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
5335614 |
agcaaccttcctataaccaaaat |
5335592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 29 - 223
Target Start/End: Complemental strand, 5376213 - 5376018
Alignment:
| Q |
29 |
gacttcaacttccaacctctgttca-atttgatcttttaaatcttaataatgttttgctcagcaattaataaaaaagtagactaattttaaattaaaatg |
127 |
Q |
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||||||||||||||||||||||| ||||||||| |||||||||||||||||||| |||||| ||||||||||| ||||||||| || ||||||||||| |
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| T |
5376213 |
gacttcaacttccaacctctgttttgatttgatctcttaaatcttaataatgttttcctcagcgattaataaaaatgtagactaaattaaaattaaaatg |
5376114 |
T |
|
| Q |
128 |
agactactgtaaggatgatatacgttatatcgcttttaacaaaatcaatcacatgagctgcatctaagaaacaagcaaccttcctataaccaaaat |
223 |
Q |
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||||||||||||||||||||||| ||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
5376113 |
agactactgtaaggatgatatactttatatcgcttttaaaaaaatcaatcacatgatctgcatctaagaaacaagcaaccttcctataaccaaaat |
5376018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 101
Target Start/End: Original strand, 5254749 - 5254795
Alignment:
| Q |
55 |
tttgatcttttaaatcttaataatgttttgctcagcaattaataaaa |
101 |
Q |
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||||||||||||||||||| |||||||| |||| |||||||| |||| |
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| T |
5254749 |
tttgatcttttaaatcttactaatgtttagctcggcaattaaaaaaa |
5254795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 191 - 221
Target Start/End: Complemental strand, 5401160 - 5401130
Alignment:
| Q |
191 |
ctaagaaacaagcaaccttcctataaccaaa |
221 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
5401160 |
ctaagaaacaagcaaccttcctataaccaaa |
5401130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 125 - 223
Target Start/End: Complemental strand, 9947212 - 9947113
Alignment:
| Q |
125 |
atgagactactgtaaggatgatatacgtt-atatcgcttttaacaaaatcaatcacatgagctgcatctaagaaacaagcaaccttcctataaccaaaat |
223 |
Q |
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||||||||||| ||| ||||||||| ||| ||||||||||||| || ||||||||| |||| ||| || |||||||| |||||||||||||| |||||| |
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| T |
9947212 |
atgagactactataacgatgatatatgtttatatcgcttttaataatatcaatcacgtgagttgcgtccgagaaacaatcaaccttcctataatcaaaat |
9947113 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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