View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18957_low_31 (Length: 227)
Name: NF18957_low_31
Description: NF18957
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18957_low_31 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 8 - 227
Target Start/End: Complemental strand, 34001933 - 34001708
Alignment:
| Q |
8 |
tcagaacataaaaagatagttcttcaccccttttgtaataaagatattcttaatgtacaaaccaagaacactccttcaagtggacccaaaccttactaat |
107 |
Q |
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| T |
34001933 |
tcagaacataaaaagatagttcttcaccccttttgcaataaagatattcttaatgtacaaaccacgaacactccttcaactggacccaaaccttactaat |
34001834 |
T |
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| Q |
108 |
gggataatggagaacaatagccgtaagttcagcaatggatgccaactactgactacttggtgacataagcac------ttgcagggatggaatttggggg |
201 |
Q |
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| T |
34001833 |
gggataatggagaacaatagccgtaagttcagcaatggatgccaactactgactacttggtgacataagcacttggagttggagggatggaatttggggg |
34001734 |
T |
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| Q |
202 |
tggtccaaagttcatgtaatggtgaa |
227 |
Q |
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| T |
34001733 |
tggtccaaagttcatgtaatggtgaa |
34001708 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 44 - 102
Target Start/End: Complemental strand, 34005520 - 34005462
Alignment:
| Q |
44 |
aataaagatattcttaatgtacaaaccaagaacactccttcaagtggacccaaacctta |
102 |
Q |
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| T |
34005520 |
aataaagatgctcttaatgtacagagcaagaacactccttcaacaggacccaaacctta |
34005462 |
T |
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