View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18957_low_32 (Length: 226)
Name: NF18957_low_32
Description: NF18957
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18957_low_32 |
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Alignment Details
Target: chr5 (Bit Score: 143; Significance: 3e-75; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 43 - 214
Target Start/End: Original strand, 1241766 - 1241933
Alignment:
| Q |
43 |
cctattatatctatggagcagttgttgtaaaaaccactgcaatttactcagtttgctacattgcaagactttactgtagcctctccccgcttcaaaaacc |
142 |
Q |
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| T |
1241766 |
cctattttatctatggagcagttgttgtaaaaaccactgcaatttactcagtttgctacattgcaagactttactgtagcctctccccgcttcaaaaacc |
1241865 |
T |
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| Q |
143 |
accggatctgcatattctctcatcacaagatatatatcttattcagctgcaagcaacttcgtcttcttctca |
214 |
Q |
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| T |
1241866 |
accggatctgcatattctctcatcacaag----atatcttattcagctgcaagcaacttcgtattctgctca |
1241933 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 112; Significance: 9e-57; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 62 - 202
Target Start/End: Original strand, 472331 - 472467
Alignment:
| Q |
62 |
agttgttgtaaaaaccactgcaatttactcagtttgctacattgcaagactttactgtagcctctccccgcttcaaaaaccaccggatctgcatattctc |
161 |
Q |
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| T |
472331 |
agttgttgtaaaaaccaccgcaatttactcagtttgctacattgcaatactttacagtagcctctccccgcttcaaaaaccaccggatctgcatattctc |
472430 |
T |
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| Q |
162 |
tcatcacaagatatatatcttattcagctgcaagcaacttc |
202 |
Q |
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| T |
472431 |
tcatcacaag----atatcttattcagctgcaagcaacttc |
472467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 93; Significance: 2e-45; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 62 - 198
Target Start/End: Complemental strand, 41526926 - 41526791
Alignment:
| Q |
62 |
agttgttgtaaaaaccactgcaatttactcagtttgctac---attgcaagactttactgtagcctctccccgcttcaaaaaccaccggatctgcatatt |
158 |
Q |
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| T |
41526926 |
agttgttgtaaaaaccactgcaatttactcagtttgctactacattgcaatactttactgtagcctctccccgcttcaaaaaccacctgatctgcatatt |
41526827 |
T |
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| Q |
159 |
ctctcatcacaagatatatatcttattcagctgcaagcaa |
198 |
Q |
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| T |
41526826 |
ctctcatcataag----atatcttattcagctgcatgcaa |
41526791 |
T |
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