View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18957_low_33 (Length: 220)
Name: NF18957_low_33
Description: NF18957
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18957_low_33 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 33162290 - 33162509
Alignment:
| Q |
1 |
cccttcccttctagtctctggtccacaccctcaaactcctccgtcgtgtggaccgcttacacatgcaaatcctacacatgtctcattgaccgttcccgca |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33162290 |
cccttcccttctagtctctggtccacaccctcaaactcctcagtcgtgtggaccgcttacacatgcaaatcctacacatgtctcattgaccgttcccgca |
33162389 |
T |
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| Q |
101 |
atcagagaggctttgatgattgtaaagactgttttgatctcaacggccgggagaagcaccgttggacaaaccctagatcgaaaggtctagatttcagtat |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || ||||||||||||||||| |
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| T |
33162390 |
cgcagagaggctttgatgattgtaaagactgttttgatctcaacggccgtgagaagcaccgttggacaaaccctagatcaaacggtctagatttcagtat |
33162489 |
T |
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| Q |
201 |
cgatgatgttttagaaacac |
220 |
Q |
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||| |||||||||||||||| |
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| T |
33162490 |
cgacgatgttttagaaacac |
33162509 |
T |
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