View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18957_low_4 (Length: 463)
Name: NF18957_low_4
Description: NF18957
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18957_low_4 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 326; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 82 - 463
Target Start/End: Complemental strand, 47242930 - 47242549
Alignment:
| Q |
82 |
gacatggatagcatctatcaataaaaccaaaaggagtgtgatgagcaaagagagttatgtagaatttaatacaccagacattgaaagggactaaagctag |
181 |
Q |
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| T |
47242930 |
gacatggatagcaactatcaataaaaccaaaaggagggtgatgagcaaagagagttatgtagaatttaatacaccagacattgaaagggactaaagctag |
47242831 |
T |
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| Q |
182 |
atgggcaatttaacagtacctacgtggctaagtcgacaaaaaagaaatcccaataatgtagtgcttttctcattttcttcggttatgtacatctttatta |
281 |
Q |
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| T |
47242830 |
atgggcaatgtaacagtacctacgtggctaagtcgacaaaaaagaaatcccaataatgtagtgcttttctcattttcttcggttatgtatatctttatta |
47242731 |
T |
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| Q |
282 |
tatttcattcacgatacttcatatttttctatatatgtattattctcttttgtcttctacaataattttaaatcaattattataccaactgggtagtaaa |
381 |
Q |
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| T |
47242730 |
tatttcattcacaatacttcatatttttctatatatgtattattctcttttgtcttctacaataattttaaatcgattattttaccaactgggtagtaga |
47242631 |
T |
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| Q |
382 |
catcttagtgtatctttggttttactgtaaaaaagcaaaattaatttccctagtaatatgaagctcaatcaaaagatgaata |
463 |
Q |
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| T |
47242630 |
catcttagtgtatctttggttttacagtaaaaaaaaaattataatttccctagtaatatgaagctcaatcaaaagatgaata |
47242549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 15 - 52
Target Start/End: Complemental strand, 47244171 - 47244134
Alignment:
| Q |
15 |
aatatgagatgatccaaaagagaaaactgagtcgggat |
52 |
Q |
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| T |
47244171 |
aatatgagatgatccaaaagagaaaactgggtggggat |
47244134 |
T |
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