View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18957_low_5 (Length: 439)
Name: NF18957_low_5
Description: NF18957
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18957_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 19 - 431
Target Start/End: Complemental strand, 53700436 - 53700048
Alignment:
| Q |
19 |
cctcgtgccactatactactaatttcaatatactttattgctcttattaattttatgggnnnnnnnnnnnnacatagtattcttaatt----tccggtat |
114 |
Q |
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| T |
53700436 |
cctcgtgccactatactactaatttcaatatactttattgctcttattaattttatgggtttttattttttacatagtattcttaattaatttccggtat |
53700337 |
T |
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| Q |
115 |
gaaaacaacaactgaaaattcttagcgtgttgtgtctaaaccagattcacatttcacactgttctctatctgatt-ctgtccatgaattcaccacaagtg |
213 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
53700336 |
taaaacaacaactgagaattcttagcgtgttgtgtctaaaccagattcacatttcacactgttctctatctgattcctgtccatgaattcaccacaagtg |
53700237 |
T |
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| Q |
214 |
taaatttattagccacatgaaataacaatactatatacacgacttttttatccaattgatttaagtcgatcaggcataaaatatttactgtaactctttt |
313 |
Q |
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||||||||||||||| ||||||||||||||| ||||||||||||||||| ||| ||||||||||||||||||||||||||| |
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| T |
53700236 |
taaatttattagccatatgaaataacaatac-----------------tatccaattgatttaag----tcaagcataaaatatttactgtaactctttt |
53700158 |
T |
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| Q |
314 |
ttctctagtt-aaaatacttacttctatatattatgaataaaatgtactagctagttgatatgatatgaatgttctgatgttaaaatatattcttgtttt |
412 |
Q |
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|||||||||| |||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
53700157 |
ttctctagttaaaaatacttacttc----tattatgaataaaatgtactagctagt-----tgatatgaatgttctgatgttaaaatatattcttgtttt |
53700067 |
T |
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