View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18957_low_9 (Length: 396)
Name: NF18957_low_9
Description: NF18957
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18957_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 295; Significance: 1e-165; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 11 - 381
Target Start/End: Complemental strand, 16011223 - 16010853
Alignment:
| Q |
11 |
cagagatgagttttaccatttaactttggaccgactctaatcaaccaagggattgcgtttgtgggtgattttatgagaaagatattgtgtttaatgaggt |
110 |
Q |
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| T |
16011223 |
cagagatgagttttgccgtttaattttggaccgactctaatcaaccaagggattgagtttgtaggtgatttgatgagaaacatattgtgtttaatgaggt |
16011124 |
T |
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| Q |
111 |
agttgttttttatgtttgagaattctggaagctttaagggtaaatggttttgatggtagttagggcttgaagaagagcgccacgaggaacaaactgaatg |
210 |
Q |
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| T |
16011123 |
agttgttttcgatgtttgagaattctggaagctttaagggtaaatggttttgatggtagttagggcttgaagaagagcgccacgaggaacaaactgaacg |
16011024 |
T |
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| Q |
211 |
aaagcgaaggcgatagagttcgctgtctagtctttcggatattacttgaagaagttcctttggaagttgagaccaatctggttttctaacctttttattt |
310 |
Q |
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| T |
16011023 |
aaagcgaaggcgatagagttcactgtctagtctttcggatattagttgaagaagttcctttgcaagttgagaccaatctggttttttagcctttttcttt |
16010924 |
T |
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| Q |
311 |
atttttatcttgtggagaatagaaacaagaacctggatgaaggaatttgagaccaatctaaccattgatgt |
381 |
Q |
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| T |
16010923 |
atttttagcttgtcgagaatagaaacaagaacctggatgaaggaatttgagaccaatctaaccatggatgt |
16010853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 136 - 218
Target Start/End: Complemental strand, 449454 - 449369
Alignment:
| Q |
136 |
tggaagctttaagggtaaatggttttgatggtagttagg---gcttgaagaagagcgccacgaggaacaaactgaatgaaagcgaa |
218 |
Q |
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| T |
449454 |
tggaaactttaagcgtaaatggttttgatggtagttaggcgggatagatgaagagcgccatgtggaacaaacagaacgaaagcgaa |
449369 |
T |
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