View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18958_high_1 (Length: 764)

Name: NF18958_high_1
Description: NF18958
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18958_high_1
NF18958_high_1
[»] chr4 (6 HSPs)
chr4 (256-651)||(5228636-5229031)
chr4 (12-194)||(5228459-5228643)
chr4 (37-150)||(44841924-44842037)
chr4 (60-150)||(51387083-51387173)
chr4 (66-127)||(14527540-14527601)
chr4 (49-150)||(45393981-45394082)
[»] chr2 (3 HSPs)
chr2 (37-150)||(20606856-20606969)
chr2 (12-92)||(38137790-38137874)
chr2 (49-150)||(40584316-40584417)
[»] chr7 (2 HSPs)
chr7 (37-151)||(30581201-30581315)
chr7 (49-151)||(36611685-36611787)
[»] chr6 (1 HSPs)
chr6 (86-150)||(2741383-2741447)
[»] chr1 (1 HSPs)
chr1 (94-141)||(17932835-17932882)


Alignment Details
Target: chr4 (Bit Score: 287; Significance: 1e-160; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 287; E-Value: 1e-160
Query Start/End: Original strand, 256 - 651
Target Start/End: Original strand, 5228636 - 5229031
Alignment:
Q  256 caactagagtaacctcttacgcactatggagtgatatatgttgtatattcaattatatataatcattctttatggcatttagtttgtaattggctcggtt 355  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  | ||||||||||||||||||||||||||||    
T  5228636 caacaagagtaacctcttacgcactatggagtgatatatgttgtatattcaattatatataatcattccctgtggcatttagtttgtaattggctcggtt 5228735  T
Q  356 tctcgccagctgagccaaaagttatttcgactcatctcattcagtttggcaacgtagcgggcggcacaaaatcaaggcgcgcttttatggttatgatttg 455  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| || |||| |||||||| || ||||||||||||||||||    
T  5228736 tctcgccagctgagccaaaagttatttcggctcatctcattcagtttggcaacatagcgggtggaacaagatcaaggcacgtttttatggttatgatttg 5228835  T
Q  456 actcgcttgtctttagattatttagaacgnnnnnnncaacatgatttttaataacaacgaaagctcaagtattcagcagttcgataatcttacgttgctt 555  Q
    |||||||||||||| | |||||||||||        |||| |||||||||||||||||||||||||||||||||||||||| |||||| ||| |||| ||    
T  5228836 actcgcttgtctttgggttatttagaacaaaagaaacaacgtgatttttaataacaacgaaagctcaagtattcagcagttagataatgttaagttgttt 5228935  T
Q  556 tgctaccgcggctaaagacaatttactcatattatttttggttatcatgacggatggtgtagccctcttatgtgattggacattggttaattcatg 651  Q
    |||||||| | |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5228936 tgctaccgtgactaaagacaatttactcatattgtttttggttatcatgacggatggtgtagccctcttatgtgattggacattggttaattcatg 5229031  T

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Target: chr4; HSP #2
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 12 - 194
Target Start/End: Original strand, 5228459 - 5228643
Alignment:
Q  12 gaagatgggagaggagacaaaaagat-----gcatagagtgcataatagaatttgtgtgcttgattgatccaatgatttttaattattgtttataatggt 106  Q
    ||||||||||||||||||||||||||     ||||||||||||||||||||||||||||||||||||||||||    | |||||||||||||||||||||    
T  5228459 gaagatgggagaggagacaaaaagatctgatgcatagagtgcataatagaatttgtgtgcttgattgatccaac---tcttaattattgtttataatggt 5228555  T
Q  107 tcaccgatgagggacttaatttaaccttcaccttataattcaccctacaaagtattgagacttggagaacgtttacacaacaacaaga 194  Q
    |||||| ||| ||| |||||| |||  ||||| || ||||||||||| ||||||||||||||||||||| ||||||||||||||||||    
T  5228556 tcaccggtgatggatttaattgaacactcaccctaaaattcaccctataaagtattgagacttggagaaggtttacacaacaacaaga 5228643  T

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Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 37 - 150
Target Start/End: Complemental strand, 44842037 - 44841924
Alignment:
Q  37 tgcatagagtgcataatagaatttgtgtgcttgattgatccaatgatttttaattattgtttataatggttcaccgatgagggacttaatttaaccttca 136  Q
    ||||||||||| |||||||||| |||| |||||||||||| ||||  | | ||||||||||||| |||| |||  | |||||||||||||| ||| ||||    
T  44842037 tgcatagagtgtataatagaatgtgtgagcttgattgatctaatggctctcaattattgtttatgatggctcattgttgagggacttaattgaactttca 44841938  T
Q  137 ccttataattcacc 150  Q
     | || ||||||||    
T  44841937 tcctagaattcacc 44841924  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 60 - 150
Target Start/End: Original strand, 51387083 - 51387173
Alignment:
Q  60 tgtgtgcttgattgatccaatgatttttaattattgtttataatggttcaccgatgagggacttaatttaaccttcaccttataattcacc 150  Q
    ||||| ||||||| ||| ||||| ||||||||||| ||  || |||||||||| |||||||| ||||| | || ||||| |||||| ||||    
T  51387083 tgtgtacttgattaatctaatgacttttaattattattcgtagtggttcaccggtgagggacgtaattgatccctcaccctataatccacc 51387173  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 66 - 127
Target Start/End: Original strand, 14527540 - 14527601
Alignment:
Q  66 cttgattgatccaatgatttttaattattgtttataatggttcaccgatgagggacttaatt 127  Q
    ||||||| ||| ||||| | ||||||||| || ||| |||||||||| ||||||||||||||    
T  14527540 cttgattaatctaatgactcttaattattattcatagtggttcaccggtgagggacttaatt 14527601  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 150
Target Start/End: Complemental strand, 45394082 - 45393981
Alignment:
Q  49 ataatagaatttgtgtgcttgattgatccaatgatttttaattattgtttataatggttcaccgatgagggacttaatttaaccttcaccttataattca 148  Q
    |||||||||| | || |||||||||||| ||||  | | |||||||||| ||| |||||||||| | || ||||||||| |||| ||||  || ||||||    
T  45394082 ataatagaatatatgcgcttgattgatctaatggctctcaattattgttaatagtggttcaccggtaagagacttaattgaaccctcactctagaattca 45393983  T
Q  149 cc 150  Q
    ||    
T  45393982 cc 45393981  T

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Target: chr2 (Bit Score: 46; Significance: 8e-17; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 37 - 150
Target Start/End: Original strand, 20606856 - 20606969
Alignment:
Q  37 tgcatagagtgcataatagaatttgtgtgcttgattgatccaatgatttttaattattgtttataatggttcaccgatgagggacttaatttaaccttca 136  Q
    |||||| |||| |||||||||| | |   ||||||||||| ||||  | |||||||||||||||| |||||||||| |||||||||||||| |||| |||    
T  20606856 tgcatatagtgtataatagaatctatactcttgattgatctaatggctcttaattattgtttatagtggttcaccggtgagggacttaattgaaccctca 20606955  T
Q  137 ccttataattcacc 150  Q
    || || ||||||||    
T  20606956 ccctagaattcacc 20606969  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 92
Target Start/End: Complemental strand, 38137874 - 38137790
Alignment:
Q  12 gaagatgggagaggagacaaaa-----agatgcatagagtgcataatagaatttgtgtgcttgattgatccaatgatttttaatta 92  Q
    ||||||| ||||||||||||||      ||||||||||||||||||||| ||| ||| |||| |||||||||||| || |||||||    
T  38137874 gaagatgagagaggagacaaaatgatcggatgcatagagtgcataatag-attcgtgcgctttattgatccaatggttcttaatta 38137790  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 150
Target Start/End: Original strand, 40584316 - 40584417
Alignment:
Q  49 ataatagaatttgtgtgcttgattgatccaatgatttttaattattgtttataatggttcaccgatgagggacttaatttaaccttcaccttataattca 148  Q
    |||||||||| | || |||||||||||| ||||  | | |||||||||| |   |||||||||| |||||||| || || |||| ||||| |||||||||    
T  40584316 ataatagaatctatgcgcttgattgatctaatggctctcaattattgttaacggtggttcaccggtgagggacctagttgaaccctcaccctataattca 40584415  T
Q  149 cc 150  Q
    ||    
T  40584416 cc 40584417  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 37 - 151
Target Start/End: Original strand, 30581201 - 30581315
Alignment:
Q  37 tgcatagagtgcataatagaatttgtgtgcttgattgatccaatgatttttaattattgtttataatggttcaccgatgagggacttaatttaaccttca 136  Q
    |||||| |||| |||||||||| | |   ||||||||||| ||||  | |||||||||||||||| |||||||| | |||||||||||||| |||| |||    
T  30581201 tgcatatagtgtataatagaatctatactcttgattgatctaatggctcttaattattgtttatagtggttcactggtgagggacttaattgaaccctca 30581300  T
Q  137 ccttataattcaccc 151  Q
    || || |||||||||    
T  30581301 ccctagaattcaccc 30581315  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 49 - 151
Target Start/End: Original strand, 36611685 - 36611787
Alignment:
Q  49 ataatagaatttgtgtgcttgattgatccaatgatttttaattattgtttataatggttcaccgatgagggacttaatttaaccttcaccttataattca 148  Q
    |||||| ||| ||||  ||||||| ||| || |||| |||||| ||||||| | |||||||| |||||||||||||||| |||| ||||| || |||| |    
T  36611685 ataataaaatatgtgcacttgattaatctaacgattcttaattgttgtttacagtggttcactgatgagggacttaattgaaccctcaccctaaaattta 36611784  T
Q  149 ccc 151  Q
    |||    
T  36611785 ccc 36611787  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 86 - 150
Target Start/End: Original strand, 2741383 - 2741447
Alignment:
Q  86 ttaattattgtttataatggttcaccgatgagggacttaatttaaccttcaccttataattcacc 150  Q
    ||||||| | || |||||||||||||| |||||||||| ||| |||| |||||||| ||||||||    
T  2741383 ttaattaattttgataatggttcaccggtgagggacttgattaaaccatcaccttagaattcacc 2741447  T

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Target: chr1 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 141
Target Start/End: Complemental strand, 17932882 - 17932835
Alignment:
Q  94 tgtttataatggttcaccgatgagggacttaatttaaccttcacctta 141  Q
    ||||| |||||||||| ||||||| ||||||||| |||||||||||||    
T  17932882 tgtttttaatggttcatcgatgagcgacttaattgaaccttcacctta 17932835  T

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