View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18958_high_10 (Length: 463)

Name: NF18958_high_10
Description: NF18958
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18958_high_10
NF18958_high_10
[»] chr4 (16 HSPs)
chr4 (155-409)||(5885172-5885421)
chr4 (157-447)||(5847097-5847364)
chr4 (345-448)||(5560064-5560167)
chr4 (330-447)||(3750008-3750125)
chr4 (330-447)||(5614147-5614264)
chr4 (287-447)||(5570108-5570268)
chr4 (7-101)||(5882342-5882434)
chr4 (357-447)||(5894265-5894355)
chr4 (2-101)||(5884916-5885012)
chr4 (1-101)||(5846845-5846942)
chr4 (250-447)||(5851963-5852157)
chr4 (355-413)||(5565653-5565711)
chr4 (355-413)||(5605971-5606029)
chr4 (256-395)||(5859172-5859308)
chr4 (357-404)||(5538321-5538368)
chr4 (258-307)||(5606071-5606120)
[»] chr8 (3 HSPs)
chr8 (192-447)||(23268478-23268731)
chr8 (355-447)||(1486305-1486397)
chr8 (11-89)||(23268838-23268919)
[»] scaffold0454 (1 HSPs)
scaffold0454 (355-447)||(1491-1584)


Alignment Details
Target: chr4 (Bit Score: 129; Significance: 1e-66; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 155 - 409
Target Start/End: Original strand, 5885172 - 5885421
Alignment:
Q  155 tgttccacaatgcaaaacacatgacatattgtgtatgtatgcatgtttctgaaactttataaaacaaaccatttgttccgtttttgtcactcaagagtaa 254  Q
    ||||||||| |||||||||||||||||||||||||||    ||| |||||||||||||||||||||||||||||||   ||| |||||||||| ||||||    
T  5885172 tgttccacagtgcaaaacacatgacatattgtgtatg----catatttctgaaactttataaaacaaaccatttgtgttgttgttgtcactca-gagtaa 5885266  T
Q  255 ttaaacaacaatgagatcaattacatttcttacattgttttccttccttctctgctacaactgcannnnnnncactttccaaacctctcttgcctctacg 354  Q
    |||| ||||||||||||| |||||||| ||| ||| ||||||| ||||| |||||||| ||||||       ||||||||| | ||||||||||||| |     
T  5885267 ttaaccaacaatgagatcgattacattactttcatcgttttccatccttatctgctactactgcatttttttcactttccagaactctcttgcctctgcc 5885366  T
Q  355 aaatgtcttgaggatcaacaatcagtgttgcttcaattaaaaaacaatctcacat 409  Q
    |||||||||||||||||||||||| ||||||| ||||||||||||||||||||||    
T  5885367 aaatgtcttgaggatcaacaatcactgttgctccaattaaaaaacaatctcacat 5885421  T

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Target: chr4; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 157 - 447
Target Start/End: Original strand, 5847097 - 5847364
Alignment:
Q  157 ttccacaatgcaaaacacatgacatattgtgtatgtatgcatgtttctgaaactttataaaacaaaccatttgttccgtttttgtcactcaagagtaatt 256  Q
    |||||||||||||||||| |||   ||||||||||||||||| ||||||||||||||||| ||||||||||||| | ||| ||||||||| |||||||||    
T  5847097 ttccacaatgcaaaacacgtgaatgattgtgtatgtatgcatatttctgaaactttataacacaaaccatttgtgctgttgttgtcactc-agagtaatt 5847195  T
Q  257 aaacaacaatgagatcaattacatttcttacattgttttccttccttctctgctacaactgcannnnnnncactttccaaacctctcttgcctctacgaa 356  Q
    || ||||||||||||| |||||||| |||||||| |||||||||||| ||||                      ||||||||||||||||||| | | ||    
T  5847196 aaccaacaatgagatcgattacattacttacattcttttccttccttatctg----------------------ttccaaacctctcttgcctttgccaa 5847273  T
Q  357 atgtcttgaggatcaacaatcagtgttgcttcaattaaaaaacaatctcacattcgatcctgaatattccaccaaactaatattgtggaat 447  Q
    |||||||||||||||||||||| | ||| | ||||| |||||||||||||||||  |||||||  ||||||| ||||||||||||||||||    
T  5847274 atgtcttgaggatcaacaatcatttttgatccaatttaaaaacaatctcacatttcatcctgagaattccacgaaactaatattgtggaat 5847364  T

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Target: chr4; HSP #3
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 345 - 448
Target Start/End: Complemental strand, 5560167 - 5560064
Alignment:
Q  345 tgcctctacgaaatgtcttgaggatcaacaatcagtgttgcttcaattaaaaaacaatctcacattcgatcctgaatattccaccaaactaatattgtgg 444  Q
    ||||||||| |||||||||||||||||||||||| |||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  5560167 tgcctctaccaaatgtcttgaggatcaacaatcattgttgcatcaattaaaaaacaatctcacattcaatcctgaatattccaccaaactaatattgtgg 5560068  T
Q  445 aatc 448  Q
    ||||    
T  5560067 aatc 5560064  T

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Target: chr4; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 330 - 447
Target Start/End: Complemental strand, 3750125 - 3750008
Alignment:
Q  330 tttccaaacctctcttgcctctacgaaatgtcttgaggatcaacaatcagtgttgcttcaattaaaaaacaatctcacattcgatcctgaatattccacc 429  Q
    |||||||| || | || ||||| | |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | | ||||  |||||||    
T  3750125 tttccaaatctttgttacctctgccaaatgtcttgaggatcaacaatcattgttgcttcaattaaaaaacaatctcacattcaaccatgaaagttccacc 3750026  T
Q  430 aaactaatattgtggaat 447  Q
    ||||||  ||||||||||    
T  3750025 aaactagaattgtggaat 3750008  T

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Target: chr4; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 330 - 447
Target Start/End: Complemental strand, 5614264 - 5614147
Alignment:
Q  330 tttccaaacctctcttgcctctacgaaatgtcttgaggatcaacaatcagtgttgcttcaattaaaaaacaatctcacattcgatcctgaatattccacc 429  Q
    ||||||||| |||||| ||||| | ||||||||||||||||||| | |  ||||||||||||| |||||||||||| ||||  |||||||| |||||||     
T  5614264 tttccaaacttctctttcctctgccaaatgtcttgaggatcaacgaactttgttgcttcaattcaaaaacaatctcgcatttcatcctgaaaattccaca 5614165  T
Q  430 aaactaatattgtggaat 447  Q
    ||||||||||||||||||    
T  5614164 aaactaatattgtggaat 5614147  T

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Target: chr4; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 287 - 447
Target Start/End: Original strand, 5570108 - 5570268
Alignment:
Q  287 cattgttttccttccttctctgctacaactgcannnnnnncactttccaaacctctcttgcctctacgaaatgtcttgaggatcaacaatcagtgttgct 386  Q
    ||||||||||||||||||| |||||| ||||||       ||||||||||| | || |||||||  | |||||||||||||||||||||||  |||||||    
T  5570108 cattgttttccttccttctatgctactactgcatatatctcactttccaaatcactgttgcctcagccaaatgtcttgaggatcaacaatcgttgttgct 5570207  T
Q  387 tcaattaaaaaacaatctcacattcgatcctgaatattccaccaaactaatattgtggaat 447  Q
     ||| ||||||| |||||||||| | | ||||||  |||||||||||||| ||| ||||||    
T  5570208 ccaactaaaaaataatctcacatacaaccctgaaacttccaccaaactaaaattatggaat 5570268  T

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Target: chr4; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 7 - 101
Target Start/End: Original strand, 5882342 - 5882434
Alignment:
Q  7 taaggtaacatttttctcagccacaatggaaggcccaaaaagactaagcttaatatggaaagtggacaactttaatgcatcatgatgaattctta 101  Q
    ||||||||||||||||||| |||||||||| | ||||||||||||| ||||  |||| ||||||||||||||||||||||||||||| |||||||    
T  5882342 taaggtaacatttttctcatccacaatggacgacccaaaaagactatgctt--tatgaaaagtggacaactttaatgcatcatgatggattctta 5882434  T

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Target: chr4; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 357 - 447
Target Start/End: Original strand, 5894265 - 5894355
Alignment:
Q  357 atgtcttgaggatcaacaatcagtgttgcttcaattaaaaaacaatctcacattcgatcctgaatattccaccaaactaatattgtggaat 447  Q
    |||||||||||||||||||||| ||||||| ||||| ||||| |||||||||||  ||||||||  ||| |||||||||||||||||||||    
T  5894265 atgtcttgaggatcaacaatcattgttgctccaattcaaaaaaaatctcacatttcatcctgaaggttctaccaaactaatattgtggaat 5894355  T

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Target: chr4; HSP #9
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 2 - 101
Target Start/End: Original strand, 5884916 - 5885012
Alignment:
Q  2 ctttttaaggtaacatttttctcagccacaatggaaggcccaaaaagactaagcttaatatggaaagtggacaactttaatgcatcatgatgaattctta 101  Q
    |||||||||| ||||||||||||| |||||||||| | ||||||||||||| ||||  ||||||||||||| ||| |||||||||||||||| |||||||    
T  5884916 ctttttaaggcaacatttttctcatccacaatggacgacccaaaaagactatgctt--tatggaaagtggaaaac-ttaatgcatcatgatggattctta 5885012  T

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Target: chr4; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 5846845 - 5846942
Alignment:
Q  1 cctttttaaggtaacatttttctcagccacaatggaaggcccaaaaagactaagcttaatatggaaagtggacaactttaatgcatcatgatgaattctt 100  Q
    ||||||||||| ||| ||||||||| |||||||||| | ||||||||||||| ||||  |||| |||||||||||| |||||||||||||||| ||||||    
T  5846845 cctttttaaggcaacgtttttctcatccacaatggacgacccaaaaagactatgctt--tatgaaaagtggacaac-ttaatgcatcatgatggattctt 5846941  T

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Target: chr4; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 250 - 447
Target Start/End: Original strand, 5851963 - 5852157
Alignment:
Q  250 agtaattaaacaacaatgagatcaattacatttcttacattgttttccttccttctctgctacaactgcannnnnnncactttccaaacctctcttgcct 349  Q
    |||||||||||||||||||||   |||||||| ||| |||||||||||||| ||||||||||| ||||||       || |||||||| | |  ||||||    
T  5851963 agtaattaaacaacaatgaga---attacattacttccattgttttccttcattctctgctactactgcatttatatcagtttccaaatcaccgttgcct 5852059  T
Q  350 ctacgaaatgtcttgaggatcaacaatcagtgttgcttcaattaaaaaacaatctcacattcgatcctgaatattccaccaaactaatattgtggaat 447  Q
    |  | |||||||| || ||||||||   | || | |||||| || |||| |||||| ||||||| ||||||  |||||||||||||| ||| ||||||    
T  5852060 cagccaaatgtctcgaagatcaacatctattgctacttcaactataaaataatctcgcattcgaccctgaaatttccaccaaactaaaattctggaat 5852157  T

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Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 355 - 413
Target Start/End: Complemental strand, 5565711 - 5565653
Alignment:
Q  355 aaatgtcttgaggatcaacaatcagtgttgcttcaattaaaaaacaatctcacattcga 413  Q
    |||||||||||||||||||||||| | ||||| ||| | ||||||||||||||||||||    
T  5565711 aaatgtcttgaggatcaacaatcattattgctccaaattaaaaacaatctcacattcga 5565653  T

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Target: chr4; HSP #13
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 355 - 413
Target Start/End: Complemental strand, 5606029 - 5605971
Alignment:
Q  355 aaatgtcttgaggatcaacaatcagtgttgcttcaattaaaaaacaatctcacattcga 413  Q
    |||||||||||||||||||||||| | ||||| ||| | ||||||||||||||||||||    
T  5606029 aaatgtcttgaggatcaacaatcattattgctccaaattaaaaacaatctcacattcga 5605971  T

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Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 256 - 395
Target Start/End: Complemental strand, 5859308 - 5859172
Alignment:
Q  256 taaacaacaatgagatcaattacatttcttacattgttttccttccttctctgctacaactgcannnnnnncactttccaaacctctcttgcctctacga 355  Q
    |||||||||||||||   |||||| | ||| ||||||||||||| ||||||| || | ||||||       ||||||||||| |||| | |||||| | |    
T  5859308 taaacaacaatgaga---attacaatactttcattgttttcctttcttctcttctgctactgcatatatatcactttccaaatctctttagcctctgcca 5859212  T
Q  356 aatgtcttgaggatcaacaatcagtgttgcttcaattaaa 395  Q
    |||||||||| |||||| ||||| || | || ||||||||    
T  5859211 aatgtcttgatgatcaagaatcattgctactccaattaaa 5859172  T

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Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 357 - 404
Target Start/End: Original strand, 5538321 - 5538368
Alignment:
Q  357 atgtcttgaggatcaacaatcagtgttgcttcaattaaaaaacaatct 404  Q
    ||||||||| |||||||||||| || ||||||||||||| ||||||||    
T  5538321 atgtcttgatgatcaacaatcattgctgcttcaattaaagaacaatct 5538368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 258 - 307
Target Start/End: Complemental strand, 5606120 - 5606071
Alignment:
Q  258 aacaacaatgagatcaattacatttcttacattgttttccttccttctct 307  Q
    ||||||||||||||||||||||||  || || ||||||| ||||||||||    
T  5606120 aacaacaatgagatcaattacattagtttcaatgttttctttccttctct 5606071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 111; Significance: 7e-56; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 192 - 447
Target Start/End: Complemental strand, 23268731 - 23268478
Alignment:
Q  192 tatgcatgtttctgaaactttataaaacaaaccatttgttccgtttttgtcactcaagagtaattaaacaacaatgagatcaattacatttcttacattg 291  Q
    ||||||| ||||||||||| || |||||||||||||||||| ||| || ||| ||| ||||| |||| |||||||||||||||||||||| ||| |||||    
T  23268731 tatgcatatttctgaaactgtacaaaacaaaccatttgttctgttgttttcattca-gagta-ttaatcaacaatgagatcaattacattactttcattg 23268634  T
Q  292 ttttccttccttctctgctacaactgcannnnnnncactttccaaacctctcttgcctctacgaaatgtcttgaggatcaacaatcagtgttgcttcaat 391  Q
    |||||||||||| ||||| || ||||||       |  ||||||||| |||||| ||||| | ||||||||||||||||||| | |  ||||||||||||    
T  23268633 ttttccttccttttctgccactactgcatttttttctttttccaaacttctctttcctctgctaaatgtcttgaggatcaacgaactctgttgcttcaat 23268534  T
Q  392 taaaaaacaatctcacattcgatcctgaatattccaccaaactaatattgtggaat 447  Q
    |||||||||||||||||||  |||||||| ||||||| ||||||||||||||||||    
T  23268533 taaaaaacaatctcacatttcatcctgaaaattccacaaaactaatattgtggaat 23268478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 355 - 447
Target Start/End: Complemental strand, 1486397 - 1486305
Alignment:
Q  355 aaatgtcttgaggatcaacaatcagtgttgcttcaattaaaaaacaatctcacattcgatcctgaatattccaccaaactaatattgtggaat 447  Q
    |||||||||||||||||||| ||| ||||||| || |||||||||||||||||||| |||| ||||| |||||||||||||| ||| ||||||    
T  1486397 aaatgtcttgaggatcaacactcattgttgctccagttaaaaaacaatctcacatttgatcatgaattttccaccaaactaaaattatggaat 1486305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 11 - 89
Target Start/End: Complemental strand, 23268919 - 23268838
Alignment:
Q  11 gtaacatttttctcagccacaatggaaggcccaaaaagac--taa-gcttaatatggaaagtggacaactttaatgcatcat 89  Q
    ||||||||||||||| |||||||||| | ||||||||||   ||| | ||||||||||||||||||||||||||||||||||    
T  23268919 gtaacatttttctcatccacaatggacgacccaaaaagataataatgtttaatatggaaagtggacaactttaatgcatcat 23268838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0454 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0454
Description:

Target: scaffold0454; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 355 - 447
Target Start/End: Complemental strand, 1584 - 1491
Alignment:
Q  355 aaatgtcttgaggatcaacaatcagtgttgcttcaattaaaaaa-caatctcacattcgatcctgaatattccaccaaactaatattgtggaat 447  Q
    |||||||||||||||||||| ||| ||||||| || |||||||| |||||||||||| |||| ||||| |||||||||||||| ||| ||||||    
T  1584 aaatgtcttgaggatcaacactcattgttgctccagttaaaaaaacaatctcacatttgatcatgaattttccaccaaactaaaattatggaat 1491  T

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