View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18958_high_11 (Length: 456)
Name: NF18958_high_11
Description: NF18958
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18958_high_11 |
 | |
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| [»] scaffold0989 (1 HSPs) |
| | |
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| [»] scaffold0466 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 420; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 1 - 440
Target Start/End: Complemental strand, 12765987 - 12765548
Alignment:
| Q |
1 |
atttgagatctaattagtagagtatcttctccataattcttacatcttctagcttctcaaaatatattttaattaatttgaaatagcgataactctagat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
12765987 |
atttgagatctaattagtagagtatcttctccataattcttacatcttctagcttctcaaaatatattttaattaatttgaaatagcgataactctagat |
12765888 |
T |
|
| Q |
101 |
aaatgttcagaaatcatttatgactctttcatatgcaaagatttgaactcaccttagagtttcgaaaaacaacttctttactttgccctctcctttacaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
12765887 |
aaatgttcagaaatcatttatgactctttcatatgcaatgatttgaactcaccttagagtttcgaaaaacaacttctttactttgccctctcctttacaa |
12765788 |
T |
|
| Q |
201 |
gagttttgaaacctctcctataccttcttaatgcatattgaatttgaaattttcttgaactcatctttatccaatgcttgatagacgaggaatcgagatt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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|
| T |
12765787 |
gagttttgaaacctctcctataccttcttaatgcattttgaatttgaaattttcttgaactcatctttatccaatgcttgatagatgaggaatcgagatt |
12765688 |
T |
|
| Q |
301 |
tcttgtctctctttcttgaatatttcaaaacatatctttgtgcttgagttaataaatccttgtcttgtgattccttacaacctttcttaacaacctccca |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| |
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|
| T |
12765687 |
tcttgtctctctttcttgaatatttcaaaacatatctttgtgcttgagttaataaatcattgtcttgtgattccttacaaccttttttaacaacctccca |
12765588 |
T |
|
| Q |
401 |
agttcaccaataagagcctttgttttcatacaataattat |
440 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
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|
| T |
12765587 |
agttcaccaataagagcctttgttttcatacaataattat |
12765548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0989 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: scaffold0989
Description:
Target: scaffold0989; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 173 - 401
Target Start/End: Original strand, 709 - 937
Alignment:
| Q |
173 |
cttctttactttgccctctcctttacaagagttttgaaacctctcctataccttcttaatgcatattgaatttgaaattttcttgaactcatctttatcc |
272 |
Q |
| |
|
||||||||| ||| | ||||||| |||||| ||| || | ||||| || ||| |||| | || ||| |||||||||||||| ||||||||||| |||| |
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|
| T |
709 |
cttctttaccttgtcttctccttggcaagaggttttaagcttctcccatgcctccttagcggatgttgcatttgaaattttctcgaactcatcttcatcc |
808 |
T |
|
| Q |
273 |
aatgcttgatagacgaggaatcgagatttcttgtctctctttcttgaatatttcaaaacatatctttgtgcttgagttaataaatccttgtcttgtgatt |
372 |
Q |
| |
|
|||||||| |||| |||||| ||| || ||||||||||||||||||| |||||| | ||||||||||| |||||| |||||| |||||||||| |
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|
| T |
809 |
aatgcttggtagatgaggaagagagcctttttgtctctctttcttgaatccttcaaagtgtctctttgtgctttagttaaggaatcctcatcttgtgatt |
908 |
T |
|
| Q |
373 |
ccttacaacctttcttaacaacctcccaa |
401 |
Q |
| |
|
||||| | ||||| | ||||||||||||| |
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|
| T |
909 |
ccttatagcctttttcaacaacctcccaa |
937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 7e-16; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 258 - 377
Target Start/End: Original strand, 25622997 - 25623116
Alignment:
| Q |
258 |
aactcatctttatccaatgcttgatagacgaggaatcgagatttcttgtctctctttcttgaatatttcaaaacatatctttgtgcttgagttaataaat |
357 |
Q |
| |
|
||||||| |||||| | ||||||||||| |||||| || ||||||||||||| |||||| ||| ||||||| ||||| |||||||||| |||| ||| |
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|
| T |
25622997 |
aactcatatttatctagtgcttgatagatgaggaagagatatttcttgtctctatttcttaaatccttcaaaatatatcattgtgcttgatttaacgaat |
25623096 |
T |
|
| Q |
358 |
ccttgtcttgtgattcctta |
377 |
Q |
| |
|
| | ||||||||||||||| |
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|
| T |
25623097 |
cttcatcttgtgattcctta |
25623116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 258 - 377
Target Start/End: Complemental strand, 7029953 - 7029836
Alignment:
| Q |
258 |
aactcatctttatccaatgcttgatagacgaggaatcgagatttcttgtctctctttcttgaatatttcaaaacatatctttgtgcttgagttaataaat |
357 |
Q |
| |
|
|||||||||| || ||||||||| |||| |||||| ||| ||||||| ||||||||||||||| |||||| |||| |||||| ||||||| | ||| |
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|
| T |
7029953 |
aactcatcttcatacaatgcttggtagaagaggaagggagctttcttgcctctctttcttgaatccttcaaa--atatttttgtgtttgagttggtgaat |
7029856 |
T |
|
| Q |
358 |
ccttgtcttgtgattcctta |
377 |
Q |
| |
|
| | ||||||||||||||| |
|
|
| T |
7029855 |
cttcatcttgtgattcctta |
7029836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 266 - 377
Target Start/End: Original strand, 25656499 - 25656610
Alignment:
| Q |
266 |
tttatccaatgcttgatagacgaggaatcgagatttcttgtctctctttcttgaatatttcaaaacatatctttgtgcttgagttaataaatccttgtct |
365 |
Q |
| |
|
|||||| | |||||| |||| |||||| || ||||||||||||| |||||| ||| ||||||| ||||| |||| ||||| |||| |||| | ||| |
|
|
| T |
25656499 |
tttatctagtgcttggtagatgaggaagagatatttcttgtctctatttcttaaatccttcaaaatatatcattgtacttgatttaacgaatcttcatct |
25656598 |
T |
|
| Q |
366 |
tgtgattcctta |
377 |
Q |
| |
|
|||||||||||| |
|
|
| T |
25656599 |
tgtgattcctta |
25656610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 258 - 377
Target Start/End: Original strand, 25805369 - 25805488
Alignment:
| Q |
258 |
aactcatctttatccaatgcttgatagacgaggaatcgagatttcttgtctctctttcttgaatatttcaaaacatatctttgtgcttgagttaataaat |
357 |
Q |
| |
|
||||||| |||||| | |||||| |||| |||||| || ||| ||||||||| ||| || ||| ||||||| ||||| |||||||||| |||| ||| |
|
|
| T |
25805369 |
aactcatatttatctagtgcttggtagatgaggaagagatattgcttgtctctatttattaaatccttcaaaatatatcattgtgcttgatttaacgaat |
25805468 |
T |
|
| Q |
358 |
ccttgtcttgtgattcctta |
377 |
Q |
| |
|
| | ||||||||||||||| |
|
|
| T |
25805469 |
cttcatcttgtgattcctta |
25805488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 258 - 377
Target Start/End: Original strand, 25810399 - 25810518
Alignment:
| Q |
258 |
aactcatctttatccaatgcttgatagacgaggaatcgagatttcttgtctctctttcttgaatatttcaaaacatatctttgtgcttgagttaataaat |
357 |
Q |
| |
|
||||||| |||||| | |||||| |||| |||||| || ||| ||||||||| ||| || ||| ||||||| ||||| |||||||||| |||| ||| |
|
|
| T |
25810399 |
aactcatatttatctagtgcttggtagatgaggaagagatattgcttgtctctatttattaaatccttcaaaatatatcattgtgcttgatttaacgaat |
25810498 |
T |
|
| Q |
358 |
ccttgtcttgtgattcctta |
377 |
Q |
| |
|
| | ||||||||||||||| |
|
|
| T |
25810499 |
cttcatcttgtgattcctta |
25810518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 258 - 377
Target Start/End: Original strand, 25823093 - 25823212
Alignment:
| Q |
258 |
aactcatctttatccaatgcttgatagacgaggaatcgagatttcttgtctctctttcttgaatatttcaaaacatatctttgtgcttgagttaataaat |
357 |
Q |
| |
|
||||||| |||||| | |||||| |||| |||||| || ||| ||||||||| ||| || ||| ||||||| ||||| |||||||||| |||| ||| |
|
|
| T |
25823093 |
aactcatatttatctagtgcttggtagatgaggaagagatattgcttgtctctatttattaaatccttcaaaatatatcattgtgcttgatttaacgaat |
25823192 |
T |
|
| Q |
358 |
ccttgtcttgtgattcctta |
377 |
Q |
| |
|
| | ||||||||||||||| |
|
|
| T |
25823193 |
cttcatcttgtgattcctta |
25823212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0466 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0466
Description:
Target: scaffold0466; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 258 - 377
Target Start/End: Complemental strand, 3471 - 3352
Alignment:
| Q |
258 |
aactcatctttatccaatgcttgatagacgaggaatcgagatttcttgtctctctttcttgaatatttcaaaacatatctttgtgcttgagttaataaat |
357 |
Q |
| |
|
||||||| |||||| | |||||| |||| |||||| || ||||||| ||||| |||||| ||| ||||||| ||||| |||||||||| |||| ||| |
|
|
| T |
3471 |
aactcatatttatctagtgcttggtagatgaggaagagatatttcttatctctatttcttaaatccttcaaaatatatcattgtgcttgatttaacgaat |
3372 |
T |
|
| Q |
358 |
ccttgtcttgtgattcctta |
377 |
Q |
| |
|
| | ||||||||||||||| |
|
|
| T |
3371 |
cttcatcttgtgattcctta |
3352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 299 - 360
Target Start/End: Complemental strand, 11577278 - 11577217
Alignment:
| Q |
299 |
tttcttgtctctctttcttgaatatttcaaaacatatctttgtgcttgagttaataaatcct |
360 |
Q |
| |
|
||||||||||||||||||||||| ||||||| | ||||||||||||||||| ||||||| |
|
|
| T |
11577278 |
tttcttgtctctctttcttgaatccttcaaaatttctctttgtgcttgagttagaaaatcct |
11577217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 271 - 339
Target Start/End: Original strand, 18008572 - 18008640
Alignment:
| Q |
271 |
ccaatgcttgatagacgaggaatcgagatttcttgtctctctttcttgaatatttcaaaacatatcttt |
339 |
Q |
| |
|
|||||||||| |||| || |||| ||| ||| |||||||||||||||||||| || |||| || ||||| |
|
|
| T |
18008572 |
ccaatgcttggtagatgatgaatagagcttttttgtctctctttcttgaatagtttaaaatatctcttt |
18008640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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