View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18958_high_13 (Length: 449)

Name: NF18958_high_13
Description: NF18958
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18958_high_13
NF18958_high_13
[»] chr6 (4 HSPs)
chr6 (6-434)||(15056975-15057399)
chr6 (232-355)||(15056973-15057095)
chr6 (161-215)||(28606579-28606633)
chr6 (162-207)||(12430568-12430613)
[»] chr4 (5 HSPs)
chr4 (144-222)||(31529814-31529892)
chr4 (157-219)||(43404607-43404669)
chr4 (157-221)||(22435455-22435519)
chr4 (157-221)||(35297575-35297639)
chr4 (157-218)||(22435345-22435406)
[»] chr2 (3 HSPs)
chr2 (157-221)||(18182492-18182556)
chr2 (157-221)||(18182604-18182668)
chr2 (157-209)||(1355997-1356052)
[»] chr8 (3 HSPs)
chr8 (158-221)||(18183016-18183079)
chr8 (157-221)||(3647489-3647553)
chr8 (161-209)||(43417523-43417571)
[»] chr5 (5 HSPs)
chr5 (171-222)||(3137704-3137755)
chr5 (144-215)||(20986545-20986616)
chr5 (143-221)||(5396360-5396437)
chr5 (147-220)||(20986427-20986500)
chr5 (157-221)||(34394655-34394719)
[»] chr3 (6 HSPs)
chr3 (157-220)||(53299832-53299896)
chr3 (157-215)||(26960942-26961000)
chr3 (158-216)||(53299701-53299759)
chr3 (157-214)||(16205706-16205763)
chr3 (160-222)||(22616639-22616701)
chr3 (185-221)||(16205822-16205858)
[»] scaffold0020 (1 HSPs)
scaffold0020 (147-220)||(1629-1702)
[»] chr7 (4 HSPs)
chr7 (160-221)||(33491173-33491234)
chr7 (144-212)||(27385922-27385990)
chr7 (157-207)||(42494776-42494826)
chr7 (157-222)||(6980851-6980915)
[»] scaffold0031 (1 HSPs)
scaffold0031 (157-197)||(105390-105430)
[»] chr1 (1 HSPs)
chr1 (157-197)||(36774935-36774975)


Alignment Details
Target: chr6 (Bit Score: 287; Significance: 1e-161; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 6 - 434
Target Start/End: Original strand, 15056975 - 15057399
Alignment:
Q  6 cacagagaatttcaggcatgacgaaatcaattacaccatgatcagcgtcagccttgtcacaccacaaattaatttttacttcatatctttcaattctatg 105  Q
    |||| ||||||||| |||||||||||||||||||||||||||||||      |||||||||||||||||||||||||||||||| |||||||||||| |     
T  15056975 cacaaagaatttcaagcatgacgaaatcaattacaccatgatcagc------cttgtcacaccacaaattaatttttacttcatctctttcaattctcta 15057068  T
Q  106 tatttaatctaggaacgataacaatcagaatttttggatccttttgcatatttgtgacattgtggttggtcaatatcagatgacattaacaccccaatgt 205  Q
    |||||||||||| | |||| |||||||  |||||||| || ||||| | | |||||| ||| ||||||| |||| ||| |||||||| ||||||||||||    
T  15057069 tatttaatctagtagcgatgacaatcaagatttttgg-tcattttgtacacttgtgatattttggttggccaatgtcacatgacattgacaccccaatgt 15057167  T
Q  206 caccaaagtgctaccccatgtagggtg---acacaaagaatttcaggcatgacaatatcaattacaccatgatcaaccttgttacaccacaaattaattt 302  Q
    ||||||||||||||||||| |||||||   ||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  15057168 caccaaagtgctaccccatatagggtgcagacacaaagaatttcaagcatgacgatatcaattacaccatgatcaaccttgttacaccacaaattaattt 15057267  T
Q  303 tttacttcatctctttccattctctgtatttaatctagtaacgataacaatcactttatttttaactccaaccatcctaactcataagtgaagaagttag 402  Q
    ||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15057268 tttacttcatctctttccattctctgtatttaatcaagtaacaataacaatcactttatttttaactccaaccatcctaactcataagtgaagaagttag 15057367  T
Q  403 ggttaagtcatataagtagtgagtggaatttt 434  Q
    ||||||||||||||||||||||||||||||||    
T  15057368 ggttaagtcatataagtagtgagtggaatttt 15057399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 232 - 355
Target Start/End: Original strand, 15056973 - 15057095
Alignment:
Q  232 gacacaaagaatttcaggcatgacaatatcaattacaccatgatcaaccttgttacaccacaaattaattttttacttcatctctttccattctctgtat 331  Q
    |||||||||||||||| ||||||| | ||||||||||||||||||| |||||| |||||||||||||| ||||||||||||||||||| ||||||| |||    
T  15056973 gacacaaagaatttcaagcatgacgaaatcaattacaccatgatcagccttgtcacaccacaaattaa-tttttacttcatctctttcaattctctatat 15057071  T
Q  332 ttaatctagtaacgataacaatca 355  Q
    ||||||||||| |||| |||||||    
T  15057072 ttaatctagtagcgatgacaatca 15057095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 161 - 215
Target Start/End: Original strand, 28606579 - 28606633
Alignment:
Q  161 gacattgtggttggtcaatatcagatgacattaacaccccaatgtcaccaaagtg 215  Q
    |||||||||||||| |||| ||| ||||||||  ||||||||||||||| |||||    
T  28606579 gacattgtggttggccaatgtcacatgacattggcaccccaatgtcacccaagtg 28606633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 162 - 207
Target Start/End: Complemental strand, 12430613 - 12430568
Alignment:
Q  162 acattgtggttggtcaatatcagatgacattaacaccccaatgtca 207  Q
    |||||||| ||||||||||||| ||||||||||||||  |||||||    
T  12430613 acattgtgattggtcaatatcacatgacattaacaccataatgtca 12430568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 144 - 222
Target Start/End: Original strand, 31529814 - 31529892
Alignment:
Q  144 tccttttgcatatttgtgacattgtggttggtcaatatcagatgacattaacaccccaatgtcaccaaagtgctacccc 222  Q
    |||||||||| | |||||||||||||||||  |||||||| |||| |||  |||| |||||||||||||||||||||||    
T  31529814 tccttttgcacacttgtgacattgtggttgaccaatatcacatgaaattggcacctcaatgtcaccaaagtgctacccc 31529892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 157 - 219
Target Start/End: Original strand, 43404607 - 43404669
Alignment:
Q  157 ttgtgacattgtggttggtcaatatcagatgacattaacaccccaatgtcaccaaagtgctac 219  Q
    ||||||||||||||||| ||||| ||||||||||||  ||||| |||||||| ||||||||||    
T  43404607 ttgtgacattgtggttgatcaatgtcagatgacattggcaccctaatgtcactaaagtgctac 43404669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 157 - 221
Target Start/End: Original strand, 22435455 - 22435519
Alignment:
Q  157 ttgtgacattgtggttggtcaatatcagatgacattaacaccccaatgtcaccaaagtgctaccc 221  Q
    ||||||||||||||||||||||| ||  || |||||  ||||||||||||||| |||||||||||    
T  22435455 ttgtgacattgtggttggtcaatgtcgcataacattggcaccccaatgtcacccaagtgctaccc 22435519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 157 - 221
Target Start/End: Original strand, 35297575 - 35297639
Alignment:
Q  157 ttgtgacattgtggttggtcaatatcagatgacattaacaccccaatgtcaccaaagtgctaccc 221  Q
    |||| ||||||||||||   ||||||| |||||||| |||||||||| ||||| |||||||||||    
T  35297575 ttgtaacattgtggttgactaatatcacatgacattgacaccccaatatcacccaagtgctaccc 35297639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 157 - 218
Target Start/End: Complemental strand, 22435406 - 22435345
Alignment:
Q  157 ttgtgacattgtggttggtcaatatcagatgacattaacaccccaatgtcaccaaagtgcta 218  Q
    |||||||||||||||| | |||| ||| ||||||||  ||||||||| ||||| ||||||||    
T  22435406 ttgtgacattgtggtttgccaatgtcacatgacattggcaccccaatatcacccaagtgcta 22435345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 157 - 221
Target Start/End: Complemental strand, 18182556 - 18182492
Alignment:
Q  157 ttgtgacattgtggttggtcaatatcagatgacattaacaccccaatgtcaccaaagtgctaccc 221  Q
    |||||||||||||||||| |||| ||| ||||||||  ||||||||||||||| |||||||||||    
T  18182556 ttgtgacattgtggttggccaatgtcacatgacattggcaccccaatgtcacccaagtgctaccc 18182492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 157 - 221
Target Start/End: Original strand, 18182604 - 18182668
Alignment:
Q  157 ttgtgacattgtggttggtcaatatcagatgacattaacaccccaatgtcaccaaagtgctaccc 221  Q
    |||||||||||||||| | |||| ||| ||||||||  ||||||||||||||| |||||||||||    
T  18182604 ttgtgacattgtggtttgccaatgtcacatgacattggcaccccaatgtcacccaagtgctaccc 18182668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 157 - 209
Target Start/End: Original strand, 1355997 - 1356052
Alignment:
Q  157 ttgtgacattgtggttggtcaatatc---agatgacattaacaccccaatgtcacc 209  Q
    |||||||||||||||||| |||| ||   |||||||||| ||||||||||||||||    
T  1355997 ttgtgacattgtggttggccaatgtcgtcagatgacattgacaccccaatgtcacc 1356052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 158 - 221
Target Start/End: Complemental strand, 18183079 - 18183016
Alignment:
Q  158 tgtgacattgtggttggtcaatatcagatgacattaacaccccaatgtcaccaaagtgctaccc 221  Q
    |||||||||||||||||||||| |||  |||||||  |||| ||||||||||||||||||||||    
T  18183079 tgtgacattgtggttggtcaatgtcatgtgacattggcacctcaatgtcaccaaagtgctaccc 18183016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 157 - 221
Target Start/End: Original strand, 3647489 - 3647553
Alignment:
Q  157 ttgtgacattgtggttggtcaatatcagatgacattaacaccccaatgtcaccaaagtgctaccc 221  Q
    ||||| |||||||||||| |||| ||| ||||||||  ||||||||||||||| |||||||||||    
T  3647489 ttgtgtcattgtggttggccaatgtcacatgacattggcaccccaatgtcacccaagtgctaccc 3647553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 161 - 209
Target Start/End: Complemental strand, 43417571 - 43417523
Alignment:
Q  161 gacattgtggttggtcaatatcagatgacattaacaccccaatgtcacc 209  Q
    |||||||||||| | |||||||| |||||||| |||| |||||||||||    
T  43417571 gacattgtggttagccaatatcacatgacattgacactccaatgtcacc 43417523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 171 - 222
Target Start/End: Complemental strand, 3137755 - 3137704
Alignment:
Q  171 ttggtcaatatcagatgacattaacaccccaatgtcaccaaagtgctacccc 222  Q
    |||| |||||||| |||||||| |||||||||||||||||||||||||||||    
T  3137755 ttggccaatatcacatgacattgacaccccaatgtcaccaaagtgctacccc 3137704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 144 - 215
Target Start/End: Original strand, 20986545 - 20986616
Alignment:
Q  144 tccttttgcatatttgtgacattgtggttggtcaatatcagatgacattaacaccccaatgtcaccaaagtg 215  Q
    |||||||||| | || ||||||||| |||||||||||||| ||||||||  || ||||||||||||||||||    
T  20986545 tccttttgcacacttatgacattgtagttggtcaatatcacatgacattggcatcccaatgtcaccaaagtg 20986616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 143 - 221
Target Start/End: Original strand, 5396360 - 5396437
Alignment:
Q  143 atccttttgcatatttgtgacattgtggttggtcaatatcagatgacattaacaccccaatgtcaccaaagtgctaccc 221  Q
    ||||||||||| | |||||| ||||||||||  |||| |||  |||||||  |||||||||||||||||| ||||||||    
T  5396360 atccttttgcacacttgtgatattgtggttgaccaatgtcac-tgacattggcaccccaatgtcaccaaattgctaccc 5396437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 147 - 220
Target Start/End: Complemental strand, 20986500 - 20986427
Alignment:
Q  147 ttttgcatatttgtgacattgtggttggtcaatatcagatgacattaacaccccaatgtcaccaaagtgctacc 220  Q
    ||||||| | |||||||||||||||||  |||| ||| || |||||  ||| |||||||||||||| |||||||    
T  20986500 ttttgcacacttgtgacattgtggttgaccaatgtcacataacatttgcacgccaatgtcaccaaaatgctacc 20986427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 157 - 221
Target Start/End: Complemental strand, 34394719 - 34394655
Alignment:
Q  157 ttgtgacattgtggttggtcaatatcagatgacattaacaccccaatgtcaccaaagtgctaccc 221  Q
    |||||||||||||||||  |||| ||| || |||||  ||||||||||||||| || ||||||||    
T  34394719 ttgtgacattgtggttgaccaatgtcacatcacattggcaccccaatgtcacccaaatgctaccc 34394655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 157 - 220
Target Start/End: Original strand, 53299832 - 53299896
Alignment:
Q  157 ttgtgacattgtggttggtcaatatcagatgacattaaca-ccccaatgtcaccaaagtgctacc 220  Q
    |||||||||||||||||| |||| |||  ||||||| ||| ||||||||||||||||||||||||    
T  53299832 ttgtgacattgtggttggccaatgtcacgtgacattgacacccccaatgtcaccaaagtgctacc 53299896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 157 - 215
Target Start/End: Original strand, 26960942 - 26961000
Alignment:
Q  157 ttgtgacattgtggttggtcaatatcagatgacattaacaccccaatgtcaccaaagtg 215  Q
    |||||||||||||||||| |||| ||| |||||||| ||||| |||||||||| |||||    
T  26960942 ttgtgacattgtggttggccaatgtcacatgacattgacacctcaatgtcacccaagtg 26961000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 158 - 216
Target Start/End: Complemental strand, 53299759 - 53299701
Alignment:
Q  158 tgtgacattgtggttggtcaatatcagatgacattaacaccccaatgtcaccaaagtgc 216  Q
    ||||||||||||||||| |||| |||  ||||||| ||||||||||||||||| |||||    
T  53299759 tgtgacattgtggttggccaatgtcatgtgacattgacaccccaatgtcaccatagtgc 53299701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 157 - 214
Target Start/End: Complemental strand, 16205763 - 16205706
Alignment:
Q  157 ttgtgacattgtggttggtcaatatcagatgacattaacaccccaatgtcaccaaagt 214  Q
    ||||||||||||||||| ||||| ||| ||||||||  ||||||||||||||| ||||    
T  16205763 ttgtgacattgtggttgatcaatgtcacatgacattggcaccccaatgtcacccaagt 16205706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 160 - 222
Target Start/End: Original strand, 22616639 - 22616701
Alignment:
Q  160 tgacattgtggttggtcaatatcagatgacattaacaccccaatgtcaccaaagtgctacccc 222  Q
    |||||||||||||| ||||| ||| |||||||| | ||| || ||||||| ||||||||||||    
T  22616639 tgacattgtggttgatcaatgtcacatgacattgatacctcagtgtcacccaagtgctacccc 22616701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 185 - 221
Target Start/End: Original strand, 16205822 - 16205858
Alignment:
Q  185 atgacattaacaccccaatgtcaccaaagtgctaccc 221  Q
    ||||||||||||||||||| ||||| |||||||||||    
T  16205822 atgacattaacaccccaatatcacccaagtgctaccc 16205858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 147 - 220
Target Start/End: Complemental strand, 1702 - 1629
Alignment:
Q  147 ttttgcatatttgtgacattgtggttggtcaatatcagatgacattaacaccccaatgtcaccaaagtgctacc 220  Q
    |||| ||||||||| || |||||| ||| |||| ||| |||||||| ||||||||| ||| |||||||||||||    
T  1702 ttttacatatttgtaactttgtggatggccaatgtcacatgacattgacaccccaacgtcgccaaagtgctacc 1629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000006; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 160 - 221
Target Start/End: Complemental strand, 33491234 - 33491173
Alignment:
Q  160 tgacattgtggttggtcaatatcagatgacattaacaccccaatgtcaccaaagtgctaccc 221  Q
    ||||||||||||||| |||| ||| ||||||||  ||||||||| ||| |||||||||||||    
T  33491234 tgacattgtggttggccaatgtcacatgacattggcaccccaatatcatcaaagtgctaccc 33491173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 144 - 212
Target Start/End: Original strand, 27385922 - 27385990
Alignment:
Q  144 tccttttgcatatttgtgacattgtggttggtcaatatcagatgacattaacaccccaatgtcaccaaa 212  Q
    |||||||||| | |||||||||||||||||| |||  ||| ||||||||  |||| |||||||||||||    
T  27385922 tccttttgcacacttgtgacattgtggttggccaacgtcacatgacattggcacctcaatgtcaccaaa 27385990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 157 - 207
Target Start/End: Complemental strand, 42494826 - 42494776
Alignment:
Q  157 ttgtgacattgtggttggtcaatatcagatgacattaacaccccaatgtca 207  Q
    |||||||||||||||| | |||| ||| |||||||||| ||||||||||||    
T  42494826 ttgtgacattgtggtttgccaatgtcacatgacattaataccccaatgtca 42494776  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 157 - 222
Target Start/End: Complemental strand, 6980915 - 6980851
Alignment:
Q  157 ttgtgacattgtggttggtcaatatcagatgacattaacaccccaatgtcaccaaagtgctacccc 222  Q
    |||||||||||||||||| ||||  ||  |||||||  ||||||||||||||| ||||||||||||    
T  6980915 ttgtgacattgtggttggccaatgacatgtgacattggcaccccaatgtcacc-aagtgctacccc 6980851  T

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Target: scaffold0031 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 157 - 197
Target Start/End: Complemental strand, 105430 - 105390
Alignment:
Q  157 ttgtgacattgtggttggtcaatatcagatgacattaacac 197  Q
    ||||||||||||| ||||||||| ||| |||||||||||||    
T  105430 ttgtgacattgtgattggtcaatgtcacatgacattaacac 105390  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 157 - 197
Target Start/End: Original strand, 36774935 - 36774975
Alignment:
Q  157 ttgtgacattgtggttggtcaatatcagatgacattaacac 197  Q
    |||| |||||||||||||||||||||| |||||||| ||||    
T  36774935 ttgtaacattgtggttggtcaatatcacatgacattgacac 36774975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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