View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18958_high_16 (Length: 421)
Name: NF18958_high_16
Description: NF18958
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18958_high_16 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 249; Significance: 1e-138; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 154 - 421
Target Start/End: Original strand, 32266026 - 32266294
Alignment:
| Q |
154 |
attcacagctttactgttatgagattttgcagcaggaaaagaatcactttctgaactgttttcttcatcactctcaacatctgttgttgaatcataagaa |
253 |
Q |
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| T |
32266026 |
attcacagctttactgttatgagattttgcagcaggaaaagaatcactttctgaactgttttcttcatcactctcaacatctgttgttgaatcataagaa |
32266125 |
T |
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| Q |
254 |
atatcattgtccttttcataatcaaaaaactcatatttcaaacatttgctaccattctcatagatttcttcatttttgttgctaaaag-aaaatccttca |
352 |
Q |
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| T |
32266126 |
atatcattgtccttttcataatcaaaaaactcatatttcaaacttttgctaccattctcatagatttctttatttttgttgctaaaagaaaaatccttca |
32266225 |
T |
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| Q |
353 |
gagtttgctttctttcttgaatcgaactttgtatcatgatccaaatccttattcatcatccctgatttc |
421 |
Q |
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| T |
32266226 |
gagtttgctttctttctcgaatcgaactttgtatcatgatccaaatccttattcatcatccctgatttc |
32266294 |
T |
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Back To:
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Target: chr4; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 16 - 84
Target Start/End: Original strand, 32265888 - 32265956
Alignment:
| Q |
16 |
atgtgatcttttatgtcctcctaatgcttgtcctgacctgaaaattttataacaaattggacattcata |
84 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| |
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| T |
32265888 |
atgtgatcttttatgtcctcctaatgcttgtcctgacctgaaaattttgtagcaaattggacattcata |
32265956 |
T |
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