View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18958_high_2 (Length: 725)
Name: NF18958_high_2
Description: NF18958
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18958_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 651; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 651; E-Value: 0
Query Start/End: Original strand, 6 - 708
Target Start/End: Original strand, 43462461 - 43463163
Alignment:
| Q |
6 |
gagatgaatcaattttgttgtcaaacaatggttcttttaaggaatactatgagttaggagatgaacttggagaaggggaattcggaactacttcactttg |
105 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
43462461 |
gagaagaatcaattttgttgtcaaacaatggttcttttaaggaatactatgagttaggagatgaacttggagaaggggaatttggaactacttcactttg |
43462560 |
T |
|
| Q |
106 |
tttggagaaatcaaccgggaaaaggtatgcatgcaaggtaatcccaaaggtgaaattgttagaagatgatgatgtagaggatgtgaggatggagattaag |
205 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| |
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| T |
43462561 |
tttggagaaatcaaccgggaaaacgtatgcatgcaaggtaatcccaaaggtgaaattgttagaagatgatgatgtagaggatgtgaggagggaaattaag |
43462660 |
T |
|
| Q |
206 |
ataatgcatcacttggttgggagtccaaatgtgatatgtataaaaggagtttatgaagattctgatgttgtttatattgtcatggaattatgtaaaggag |
305 |
Q |
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| T |
43462661 |
ataatgcatcacttggttgggagtctaaatgtgatatgtataaaaggagtttatgaagattctgatgttgtttatattgtcatggaattatgtaaaggag |
43462760 |
T |
|
| Q |
306 |
gtgagttgtttgataggattgtgaaaagaggttactacgccgaacaaaaggccgctaaacttgcaagaactattgttagtgttgttgagacttgtcactc |
405 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
43462761 |
gtgagttgtttgataggattgtgaaaagaggttactacgccgaacaaaaggccgctaaacttgcaagaactatcgttagtgttgttgagacttgtcactc |
43462860 |
T |
|
| Q |
406 |
acgtggagttatgcatcgtgatcttaagcctgaaaattttctttttgttgatggacatgaatattcaactcttaaagcaattgattttggattgtctagt |
505 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
43462861 |
acgtggagttatgcattgtgatcttaagcctgaaaattttctttttgttgatggacatgaagattcaactcttaaagcaattgattttggattgtctagt |
43462960 |
T |
|
| Q |
506 |
ttcttcaaaccaggtatggaaataatccccttctccaatttataccaatctccaaccatttcttgaaacctactattggtactgtaatgatcatatatag |
605 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
43462961 |
ttcttcaaaccaggtatggaaataatccccttctccaatttataccaatctctaaccatttcttgaaacctactattggtactgtaatgataatatatag |
43463060 |
T |
|
| Q |
606 |
tctttgtgactaacaatcttcttttgcaggagaaaaatttagtgatgcggtaggaagtccttattatatggcacctgaggttataagagagtgttatggg |
705 |
Q |
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| T |
43463061 |
tctttgtgactaacaatcttctattgcaggagaaaaatttagtgatgcagtaggaagtccttattatatggcacctgaggttataagagagtgttatggg |
43463160 |
T |
|
| Q |
706 |
cca |
708 |
Q |
| |
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||| |
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| T |
43463161 |
cca |
43463163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 272; E-Value: 1e-151
Query Start/End: Original strand, 18 - 565
Target Start/End: Original strand, 43453034 - 43453581
Alignment:
| Q |
18 |
ttttgttgtcaaacaatggttcttttaaggaatactatgagttaggagatgaacttggagaaggggaattcggaactacttcactttgtttggagaaatc |
117 |
Q |
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|||||||| ||||||||||| |||||| ||||| ||| ||||||||||||||||||| |||| | || ||||||||||||||||||||||||||||| |
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| T |
43453034 |
ttttgttgacaaacaatggtccttttagggaattttataagttaggagatgaacttgggaaaggaaagtttggaactacttcactttgtttggagaaatc |
43453133 |
T |
|
| Q |
118 |
aaccgggaaaaggtatgcatgcaaggtaatcccaaaggtgaaattgttagaagatgatgatgtagaggatgtgaggatggagattaagataatgcatcac |
217 |
Q |
| |
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|||| |||| | || |||||||| | ||| |||||||| |||||||| ||| ||||| ||||||||||||||| ||||||| | |||||||||||| |
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| T |
43453134 |
aaccaggaagacatacgcatgcaaagcaataccaaaggtaaaattgtttagagagaatgatatagaggatgtgaggagggagattgaaataatgcatcac |
43453233 |
T |
|
| Q |
218 |
ttggttgggagtccaaatgtgatatgtataaaaggagtttatgaagattctgatgttgtttatattgtcatggaattatgtaaaggaggtgagttgtttg |
317 |
Q |
| |
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|| ||||||| |||||||||||||| |||||||||| |||||||||| | | |||||||||||||| |||||||||||| |||||||||||||||||| |
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| T |
43453234 |
ttagttgggattccaaatgtgatatcaataaaaggagcttatgaagatccggtcgttgtttatattgtaatggaattatgtgaaggaggtgagttgtttg |
43453333 |
T |
|
| Q |
318 |
ataggattgtgaaaagaggttactacgccgaacaaaaggccgctaaacttgcaagaactattgttagtgttgttgagacttgtcactcacgtggagttat |
417 |
Q |
| |
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| ||||||||| |||| | | ||| |||| |||||| |||||||| |||||||| ||||||| |||||||||| |||||||||||||||||||||| |
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| T |
43453334 |
acaggattgtggaaaggagacattacaccgagagaaaggctgctaaactcgcaagaacgattgttaatgttgttgaggcttgtcactcacgtggagttat |
43453433 |
T |
|
| Q |
418 |
gcatcgtgatcttaagcctgaaaattttctttttgttgatggacatgaatattcaactcttaaagcaattgattttggattgtctagtttcttcaaacca |
517 |
Q |
| |
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||||||||||||||||||||||||||| ||||||||||||||| ||||| |||| ||||||| ||||||||||||||| |||| | ||||||||||||| |
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| T |
43453434 |
gcatcgtgatcttaagcctgaaaatttcctttttgttgatggagatgaagattccactcttatggcaattgattttggactgtccattttcttcaaacca |
43453533 |
T |
|
| Q |
518 |
ggtatggaaataatccccttctccaatttataccaatctccaaccatt |
565 |
Q |
| |
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||| |||||||||||||||||||||| ||||||||||||| ||||||| |
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| T |
43453534 |
ggtttggaaataatccccttctccaaattataccaatctctaaccatt |
43453581 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 573 - 708
Target Start/End: Original strand, 43454318 - 43454450
Alignment:
| Q |
573 |
acctactattggtactgtaatgatcatatatagtctttgtgactaacaatcttcttttgcaggagaaaaatttagtgatgcggtaggaagtccttattat |
672 |
Q |
| |
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||||||||||||| |||||||||||||||||||||||| ||||||||||||||||| |||| ||||||||||||||| || |||||| |||||||| |
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| T |
43454318 |
acctactattggt---gtaatgatcatatatagtctttgttactaacaatcttcttttacaggggaaaaatttagtgattttgtcggaagtgcttattat |
43454414 |
T |
|
| Q |
673 |
atggcacctgaggttataagagagtgttatgggcca |
708 |
Q |
| |
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| T |
43454415 |
gttgcacctgaggttatagaagagtgttatgggcca |
43454450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 51; Significance: 8e-20; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 78 - 520
Target Start/End: Complemental strand, 24421188 - 24420746
Alignment:
| Q |
78 |
aaggggaattcggaactacttcactttgtttggagaaatcaaccgggaaaaggtatgcatgcaaggtaatcccaaaggtgaaattgttagaagatgatga |
177 |
Q |
| |
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||||| |||| |||||||| | |||||| |||||||||| || |||||| ||||||||||||| |||| ||| ||| ||||| || || || |
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| T |
24421188 |
aagggcaatttggaactacattcctttgtgtggagaaatctactgggaaagagtatgcatgcaagtcaatcatgaagaggaagttgttgactgaagagga |
24421089 |
T |
|
| Q |
178 |
tgtagaggatgtgaggatggagattaagataatgcatcacttggttgggagtccaaatgtgatatgtataaaaggagtttatgaagattctgatgttgtt |
277 |
Q |
| |
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||| || |||||||||| |||||| |||| ||||||||||||| ||| ||| | |||||||| | || || | || || ||| ||| ||| || |||| |
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| T |
24421088 |
tgtggaagatgtgaggagagagattcagattatgcatcacttggctggcagttcgaatgtgatttcgattaaggaagcttctgaggatgctgttgctgtt |
24420989 |
T |
|
| Q |
278 |
tatattgtcatggaattatgtaaaggaggtgagttgtttgataggattgtgaaaagaggttactacgccgaacaaaaggccgctaaacttgcaagaacta |
377 |
Q |
| |
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|| |||| ||||| || ||| ||| ||||| | ||||||||||||||| ||||||| | || | ||| |||||| || ||||||||||| |||| |
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| T |
24420988 |
catgttgttatggagttgtgtgcaggtggtgaactttttgataggattgtggaaagagggcattatacagaaagaaaggcggcgaaacttgcaaggacta |
24420889 |
T |
|
| Q |
378 |
ttgttagtgttgttgagacttgtcactcacgtggagttatgcatcgtgatcttaagcctgaaaattttctttttgttgatggacatgaatattcaactct |
477 |
Q |
| |
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||||| ||||| || || | ||||| || | ||| || |||||||| ||||||||||| || ||||||||||||||| || || ||| | || | || |
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| T |
24420888 |
ttgttggtgttattcagtcatgtcattctcttggtgtaatgcatcgcgatcttaagccggagaattttctttttgttaatcagcaggaagaatctcccct |
24420789 |
T |
|
| Q |
478 |
taaagcaattgattttggattgtctagtttcttcaaaccaggt |
520 |
Q |
| |
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||| ||||| || |||||||| ||| |||| |||||||||||| |
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|
| T |
24420788 |
taaggcaatcgactttggattatcttgttttttcaaaccaggt |
24420746 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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