View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18958_high_21 (Length: 336)
Name: NF18958_high_21
Description: NF18958
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18958_high_21 |
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Alignment Details
Target: chr1 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 310
Target Start/End: Complemental strand, 17283970 - 17283660
Alignment:
| Q |
1 |
accaactgagctaagctcacgggacaatttttcgcattctaaaatcaattttgattacttcaaaagtgaaacgaaat----atacactaataaggcgatg |
96 |
Q |
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| T |
17283970 |
accaactgagctaagctcacgggacaatttttcgcattctaaaatcaattttgattacttcaaaagtgaaacgaaattaacatacactaataaggcgatg |
17283871 |
T |
|
| Q |
97 |
ctcactttttgtggataaacaatgattttcatcattgaatgtgtaaactactatcgctaaagtttttgaatgtatcaaaattataaaca--nnnnnnnna |
194 |
Q |
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| T |
17283870 |
ctcactttttgtggataaacaatgattttcatcattgaatgtgtaaactactattgctaaagtttttgaatgtatcaaaattataaacatttttttttta |
17283771 |
T |
|
| Q |
195 |
gggatgaaaattataaacatatccacaaatatctccttttttagtcatattaaatctcaaacatgttttcaactagacaatttagtaatcaaatgtgatt |
294 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
17283770 |
gggatgaaaattataaacatatccacaaatatctccttttt-----atattaaatctcaaacatgttttcaactagacaatttagtaatgaaatgtgatt |
17283676 |
T |
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| Q |
295 |
tttgttgatcaattta |
310 |
Q |
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|||||||||||||||| |
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| T |
17283675 |
tttgttgatcaattta |
17283660 |
T |
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