View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18958_high_23 (Length: 319)
Name: NF18958_high_23
Description: NF18958
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18958_high_23 |
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Alignment Details
Target: chr3 (Bit Score: 176; Significance: 8e-95; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 176; E-Value: 8e-95
Query Start/End: Original strand, 57 - 276
Target Start/End: Complemental strand, 24577374 - 24577152
Alignment:
| Q |
57 |
aacactccttttagttttcaactaaacactaacattcttaaaatttatgaatgtagtttgaaaaacaataaaaattaatttcaatactgaaagagaaaat |
156 |
Q |
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| T |
24577374 |
aacactccttttagttttcaactaaacactaacatccttaaaatttatgaatgtagtttgaaaaacaataaaaattaatttcaatactgaaagagaaaat |
24577275 |
T |
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| Q |
157 |
acaataacgttgtcgtataattacaataaacattaatttaatctattccttc---nnnnnnntaaacattaatttatcttatacataccctacattcatt |
253 |
Q |
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| T |
24577274 |
acaataacgttgtcgtataattacaataaacattaatttaatctattccttcaaaaaaaaaataaacagtaatttatgttatacataccctacattcatt |
24577175 |
T |
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| Q |
254 |
cgcctaaaaaactaaagaaaatg |
276 |
Q |
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||||||||||||||||||||||| |
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| T |
24577174 |
cgcctaaaaaactaaagaaaatg |
24577152 |
T |
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