View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18958_high_24 (Length: 318)
Name: NF18958_high_24
Description: NF18958
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18958_high_24 |
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Alignment Details
Target: chr8 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 297
Target Start/End: Original strand, 44375463 - 44375772
Alignment:
| Q |
1 |
aatgtagtatgaagagttgagttatgtaatttgctaagcgatgtaatttagggcctaatttat--------gaattaatttaagagtaaattagatacga |
92 |
Q |
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| T |
44375463 |
aatgtagtatgaagagttgagttatgtaatttgctaagcgatgtaatttagggcctaatttatcagtaaatgaaataatttaacagtaaattagatacga |
44375562 |
T |
|
| Q |
93 |
gctaatattaagaccaaattgcttgtnnnnnnnn-ttaagaccaaattgattgacctaattcaaaaaataggtagtttttatctattagcaaatttcacg |
191 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
44375563 |
gctaatattaagaccaaattgcttgtaaaaaaaaattaagaccaaattgattgacctaattcaaaaaaaaggtagtttttatctattagcaaatttcacg |
44375662 |
T |
|
| Q |
192 |
ggattaaatatacgacccctacaattttaacgggcaaaa----catgattaaatatatgatcattacacttttaacttcggtggttttgttgggtaataa |
287 |
Q |
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||||||||||||||||||||||||||||||||||| ||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
44375663 |
ggattaaatatacgacccctacaattttaacgggcgaaacatgcatgattaaatatacgatcattacacttttaacttcggtggttttgttgggtaataa |
44375762 |
T |
|
| Q |
288 |
aggaggaacg |
297 |
Q |
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|||||||||| |
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| T |
44375763 |
aggaggaacg |
44375772 |
T |
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