View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18958_high_33 (Length: 248)
Name: NF18958_high_33
Description: NF18958
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18958_high_33 |
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| [»] chr7 (7 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 160; Significance: 2e-85; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 18 - 248
Target Start/End: Original strand, 42848260 - 42848486
Alignment:
| Q |
18 |
attctatcaaagttattgattaggatcactgcagtatatatgtccttaagtcaattaattagattactctctgtctacgggtgttccacctgcnnnnnnn |
117 |
Q |
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| T |
42848260 |
attctatcaaagttattgattaggatcactgcagtatatatgtccttaagtcaatta----gattactctctgtctacgggtgttccacctgctttgttt |
42848355 |
T |
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| Q |
118 |
nnnnnnnnnnngactctgatacaatataatatatgtgcatgagatgtatatcatgatattctttttcattcttgtcgattagcaataataaatactttac |
217 |
Q |
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| T |
42848356 |
tttttttttttgactctgatacaatataatatatgtgcatgagatgtatatcatgatattctttttcattcttgtcgattagcaataataaatactttac |
42848455 |
T |
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| Q |
218 |
attttaccttccagctttgtgatcttaatgc |
248 |
Q |
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| T |
42848456 |
attttaccttccagctttgtgatcttaatgc |
42848486 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 18 - 248
Target Start/End: Original strand, 42854816 - 42855031
Alignment:
| Q |
18 |
attctatcaaagttattgattaggatcactgcagtatatatgtccttaagtcaattaattagattactctctgtctacgggtgttccacctgcnnnnnnn |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | || ||||| |||||| |
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| T |
42854816 |
attctatcaaagttattgattaggatcactgcagtatatatgtccttaagtcaatta----gattactctctgtcaatggatgttcgacctgcctttgtt |
42854911 |
T |
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| Q |
118 |
nnnnnnnnnnngactctgatacaatataatatatgtgcatgagatgtatatcatgatattctttttcattcttgtcgattagcaataataaatactttac |
217 |
Q |
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| T |
42854912 |
tttt-------gactcagatacaatataatat--gtgcataagat--atatcatggtattctttctcattcttgtcgatccgcaataatagatattttac |
42855000 |
T |
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| Q |
218 |
attttaccttccagctttgtgatcttaatgc |
248 |
Q |
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| T |
42855001 |
attttaacttccagctttgtgatcttaatgc |
42855031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 18 - 58
Target Start/End: Original strand, 42856457 - 42856497
Alignment:
| Q |
18 |
attctatcaaagttattgattaggatcactgcagtatatat |
58 |
Q |
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| T |
42856457 |
attctgtcaaagttattgattaggatcactgcagtatatat |
42856497 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 18 - 58
Target Start/End: Original strand, 42860524 - 42860564
Alignment:
| Q |
18 |
attctatcaaagttattgattaggatcactgcagtatatat |
58 |
Q |
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| T |
42860524 |
attctgtcaaagttattgattaggatcactgcagtatatat |
42860564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 200 - 248
Target Start/End: Original strand, 42856620 - 42856669
Alignment:
| Q |
200 |
caataataaatactttacattttacctt-ccagctttgtgatcttaatgc |
248 |
Q |
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| T |
42856620 |
caataatagatattttacattttacctttccagctttgtgatcttaatgc |
42856669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 200 - 248
Target Start/End: Original strand, 42860697 - 42860746
Alignment:
| Q |
200 |
caataataaatactttacattttacctt-ccagctttgtgatcttaatgc |
248 |
Q |
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| T |
42860697 |
caataatagatattttacattttacctttccagctttgtgatcttaatgc |
42860746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 106
Target Start/End: Original strand, 42852921 - 42853009
Alignment:
| Q |
18 |
attctatcaaagttattgattaggatcactgcagtatatatgtccttaagtcaattaattagattactctctgtctacgggtgttccac |
106 |
Q |
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| T |
42852921 |
attctatcaaagttattgatttggattactacagtacatatgtcatgaattaagtcgattagattaatctctgtctatgtgtgttccac |
42853009 |
T |
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