View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18958_high_35 (Length: 243)
Name: NF18958_high_35
Description: NF18958
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18958_high_35 |
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Alignment Details
Target: chr1 (Bit Score: 201; Significance: 1e-110; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 45387901 - 45388129
Alignment:
| Q |
1 |
aacattttttaattcttgtaatttattcaacaaatattttaaatttatgtgcaaaggtgatattacatttaaaatgaatcacgaggatatttagattaat |
100 |
Q |
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| T |
45387901 |
aacattttttaattcttgtaatttattcaacaaatattttaaatttatgtgcaaaggtgatattacatttaaaatgaatcacgaggatatttgggttaat |
45388000 |
T |
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| Q |
101 |
tatcttcacggataaagatgagaaattttaatatgagccacctttagtggtccatcgtaaactaatattttaaaatttaacgactacaaatgtcgtttta |
200 |
Q |
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| T |
45388001 |
tatcttcacggacaaagatgagaaattttaatatgagccacctttattggtccatagtaaactaatattttaaaatttaacgactacaaacgtcgtttta |
45388100 |
T |
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| Q |
201 |
tggtagtagatgtgttaatggtcctcctt |
229 |
Q |
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| T |
45388101 |
tggtagtagatgtgttaatgatcctcctt |
45388129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 45372233 - 45372320
Alignment:
| Q |
1 |
aacattttttaattcttgtaatttattcaacaaatattttaaatttatgtgcaaaggtgatattacatttaaaatgaatcacgaggatatt |
91 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||| |||||| | ||||| |||||||||| ||| || ||||||||||||| |
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| T |
45372233 |
aacattttttaattcttgtaatttatttaacaaatattttaaa-ttatgtaccaaggtaatattacatt--aaacgattcacgaggatatt |
45372320 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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