View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18958_high_37 (Length: 242)
Name: NF18958_high_37
Description: NF18958
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18958_high_37 |
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Alignment Details
Target: chr3 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 39040531 - 39040304
Alignment:
| Q |
1 |
tctttgtagtagctctggttgtcaatacttctcttggatcatgtaaatttgtgaaattagagggagaatggtaaaatttacaaaataaatcgtagttaac |
100 |
Q |
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| T |
39040531 |
tctttgtagtagctctggttgtcagtacttctcttggatcatgtaaatttgtgaaattagagggagaatggtaaaatttacaaaataaatcatagttaac |
39040432 |
T |
|
| Q |
101 |
cttatcctaatggcaaaagaatgtttcctcattgcttcaagaagtaataaatgaaaattaaaaattaatacattattatcaacaccctttatataaataa |
200 |
Q |
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| T |
39040431 |
cttatcctaatggcaaaagaatgtttcctcattgcttcaagaagtaataaatgaaaattaaaaattaatacattattatcaacaccctttatataaataa |
39040332 |
T |
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| Q |
201 |
actaatcataactcagcaagcaagcagt |
228 |
Q |
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| T |
39040331 |
actaatcataactcagcaagcaagcagt |
39040304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 3 - 194
Target Start/End: Complemental strand, 39027474 - 39027281
Alignment:
| Q |
3 |
tttgtagtagctctggttgtcaatacttctcttggatcatgtaaatttgtgaaattagagggagaatggtaaaatttacaaaataaatcgtagttaacct |
102 |
Q |
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||||||||| ||||||||| |||||||||||||| || ||| || ||||| |||| |||||||||| |||| |||||||||||||||| |||||| ||| |
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| T |
39027474 |
tttgtagtaactctggttgacaatacttctcttgattcctgtgaaattgtggaattggagggagaattgtaagatttacaaaataaatcatagttatcct |
39027375 |
T |
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| Q |
103 |
tatcctaatggcaaaagaatgtttcctcattgcttc-aagaagtaataaatgaaaatt-aaaaattaatacattattatcaacaccctttatat |
194 |
Q |
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| T |
39027374 |
tatcctaatggaaaaagaatgtttcctcatcaccccaaagaagtaataaatgaaaattcaaaaatacacacattattatcagcaccctttatat |
39027281 |
T |
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