View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18958_high_39 (Length: 235)
Name: NF18958_high_39
Description: NF18958
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18958_high_39 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 181; Significance: 6e-98; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 37820346 - 37820131
Alignment:
| Q |
1 |
taaagttcccatcaacttggctttcccagcaagtgttccaaggtttggcttctccattcttcaaaacacannnnnnnncaaccgtttgattaaatgttat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
37820346 |
taaagttcccatcaacttggctttcccagcaagtgttccaaggtttggcttctccattcttcaaaacacattttttta-aaccgtttgattaaatgttat |
37820248 |
T |
|
| Q |
101 |
tcagtatcaataatggtaagatacttagaattaaaaatataagaaaaaatgcatgtgtatttatattttattttggatgaagtagaacgttaaggttctt |
200 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37820247 |
tcagtatcaataatggaaagatacttagaattaaaaatataagaaaaaatgcatgtgtatttatattttattttggatgaagtagaacgttaaggttctt |
37820148 |
T |
|
| Q |
201 |
acttacctaagagaaac |
217 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
37820147 |
acttacctaagagaaac |
37820131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University