View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18958_high_4 (Length: 630)
Name: NF18958_high_4
Description: NF18958
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18958_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 64; Significance: 1e-27; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 2 - 73
Target Start/End: Complemental strand, 34420233 - 34420162
Alignment:
| Q |
2 |
ctcctcagtttcctgaacaacaatttcacaataaatactagaccaacagaagaacaattcttacatttaaga |
73 |
Q |
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| T |
34420233 |
ctcctcagtttcctgaacaacaatttcacaataaatactagaccaacattagaacaattcttacatttaaga |
34420162 |
T |
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Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 2 - 60
Target Start/End: Complemental strand, 34424369 - 34424311
Alignment:
| Q |
2 |
ctcctcagtttcctgaacaacaatttcacaataaatactagaccaacagaagaacaatt |
60 |
Q |
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|||||||||||||||||||||||||||| | |||||||| |||||| |||||||||||| |
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| T |
34424369 |
ctcctcagtttcctgaacaacaatttcatagtaaatacttgaccaagagaagaacaatt |
34424311 |
T |
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