View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18958_high_40 (Length: 234)
Name: NF18958_high_40
Description: NF18958
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18958_high_40 |
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Alignment Details
Target: chr1 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 7554819 - 7554599
Alignment:
| Q |
1 |
ctatccttcacttagtgagattaaactggaatacacatatttcacaaaaaataatatggagaagtcttattctttgatggattttgttgtaagccccaac |
100 |
Q |
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| T |
7554819 |
ctatccttcacttagtgagattaaactggaatacacatatttcacaaaaaataatatggagaattcttattctttgatggattttgttgtaagccccaac |
7554720 |
T |
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| Q |
101 |
ttaaagtctctatgtttgggtcacagtttacagttaagagatgaaaacatcaaagtgttagcttccatctttcccaatttagagctgcttgatttgaaaa |
200 |
Q |
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| T |
7554719 |
ttaaagtctctatgtttgggtcacagtttacagttaagagatgaaaacatcaaagtcttagcttccatctttcccaatttagagctgcttgatttgaaaa |
7554620 |
T |
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| Q |
201 |
attgctatgacatatctaaag |
221 |
Q |
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||||||||||||||||||||| |
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| T |
7554619 |
attgctatgacatatctaaag |
7554599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 133 - 198
Target Start/End: Original strand, 19468333 - 19468398
Alignment:
| Q |
133 |
gttaagagatgaaaacatcaaagtgttagcttccatctttcccaatttagagctgcttgatttgaa |
198 |
Q |
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| T |
19468333 |
gttaagcgatgaaaacatcataatgtttgcttccatttttcccaatttgcagctgcttgatttgaa |
19468398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 69 - 197
Target Start/End: Complemental strand, 9411681 - 9411556
Alignment:
| Q |
69 |
attctttgatggattttgttgtaagccccaacttaaagtctctatgtttgggtcacagtttacagttaagagatgaaaacatcaaagtgttagcttccat |
168 |
Q |
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| T |
9411681 |
attctttgatgaattttgctgtaaggccccaattgaagtctctaggtttggttcgcaattg---gttaagagataaaaacatcaaaaggtttgcttccat |
9411585 |
T |
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| Q |
169 |
ctttcccaatttagagctgcttgatttga |
197 |
Q |
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| T |
9411584 |
tttccccaatttgcagctgcttgatttga |
9411556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 101 - 219
Target Start/End: Complemental strand, 19632733 - 19632615
Alignment:
| Q |
101 |
ttaaagtctctatgtttgggtcacagtttacagttaagagatgaaaacatcaaagtgttagcttccatctttcccaatttagagctgcttgatttgaaaa |
200 |
Q |
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||||||||||| | |||||||| | ||||| |||||| |||||||| || | | |||| ||||| | ||||||||||| ||| |||||||||||| |
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| T |
19632733 |
ttaaagtctctctatttgggtcgaaatttacggttaagtgatgaaaagattacaatgttcgcttcgttttttcccaatttgtagcggcttgatttgaatc |
19632634 |
T |
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| Q |
201 |
attgctatgacatatctaa |
219 |
Q |
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| T |
19632633 |
gttgctattacatatctaa |
19632615 |
T |
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