View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18958_high_41 (Length: 230)
Name: NF18958_high_41
Description: NF18958
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18958_high_41 |
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Alignment Details
Target: chr5 (Bit Score: 144; Significance: 7e-76; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 17 - 212
Target Start/End: Complemental strand, 327657 - 327459
Alignment:
| Q |
17 |
caaaggagcaacaaaacaattaagaaacttatatgcaaccttgaatctagcaaaacacaagtttatggagtaaacataaccaagtacaatttaaaagaag |
116 |
Q |
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| T |
327657 |
caaaggagcaacaaaacaactaagaaacttatatgcaaccttgaatctagcaaaacacaagtttagggagtaaacataaccaagtacagtttaaaagaag |
327558 |
T |
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| Q |
117 |
actgtaatacacttttaagaaaatataatattgtaaagccaacaaaatacagttnnnnnnncataaccaaggagc---ataagatgcaggaaatataaa |
212 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| ||||| |
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| T |
327557 |
actgaaatacacttttaagaaaatataatattgtaaagccaacaaaatacagttaaaaaaacataaccaaggagcataataagatgcaggaaaaataaa |
327459 |
T |
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