View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18958_high_5 (Length: 527)

Name: NF18958_high_5
Description: NF18958
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18958_high_5
NF18958_high_5
[»] chr7 (1 HSPs)
chr7 (61-527)||(7751130-7751600)


Alignment Details
Target: chr7 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 61 - 527
Target Start/End: Complemental strand, 7751600 - 7751130
Alignment:
Q  61 tcctactaggttcttacaccaaaaacttatatcaactcttcacaatttttcgtcaacatatcttctagaatgcctgttttaaggactgtaatattcattc 160  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       
T  7751600 tcctactaggttcttacaccaaaaatttatatcaactcttcacaatttttcgtcaacatatcttctagaatgcctgttttaaggactgtaatattca--- 7751504  T
Q  161 agcaatcacgtagtttagggataagcaacattttaatgtcatattaacnnnnnnnn-tcatgtgccctcccgccgcctcataaccagtccacttgtgctt 259  Q
     |||||||||| ||||||||||||||||||||||||||||||||||||         |||||||||||||||| ||||||||||||||||||||||||||    
T  7751503 -gcaatcacgttgtttagggataagcaacattttaatgtcatattaacaaaaaaaaatcatgtgccctcccgctgcctcataaccagtccacttgtgctt 7751405  T
Q  260 caaatcatcaacttgattaataatgccagcattatacatttaaatcatactctataaata---gtaactatgttcccaacttttcttgcatcttctcatc 356  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||   |||||||||||||||||||||||||||||||||||||    
T  7751404 caaatcatcaacttgatcaataatgccagcattatacatttaaatcattctctataaataatagtaactatgttcccaacttttcttgcatcttctcatc 7751305  T
Q  357 aaacacnnnnnnnnnnn----ttaaattccaatcatgcgatcttcatccccaaaatcccatgttctctctttcatattcacattgtttatttgtctctct 452  Q
    ||||||               ||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7751304 aaacacaaaaaaaaataaaaattaaattccaatcatgcaatcttcatcaccaaaatcccatgttctctctttcatattcacattgtttatttgtctctct 7751205  T
Q  453 tatttgaacctctctatatctgctcaagcatgcaaccacaacgacaaaaatgttctcctagagatcaaatcccat 527  Q
    ||||||||||||| |||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||    
T  7751204 tatttgaacctctttatatctgctcaagcatgcaaccataatgacaaaaatgttctcctagagatcaaatcccat 7751130  T

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