View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18958_low_10 (Length: 463)

Name: NF18958_low_10
Description: NF18958
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18958_low_10
NF18958_low_10
[»] chr2 (22 HSPs)
chr2 (11-266)||(34220262-34220531)
chr2 (270-448)||(42439966-42440144)
chr2 (270-446)||(41251645-41251821)
chr2 (270-448)||(18981597-18981774)
chr2 (264-448)||(35962689-35962873)
chr2 (270-448)||(16405580-16405758)
chr2 (270-448)||(32127150-32127328)
chr2 (270-446)||(17445052-17445226)
chr2 (270-446)||(6403815-6403991)
chr2 (274-456)||(31581622-31581805)
chr2 (270-427)||(2958131-2958287)
chr2 (290-456)||(44084603-44084770)
chr2 (290-456)||(45418583-45418750)
chr2 (290-448)||(8147351-8147510)
chr2 (296-448)||(771005-771157)
chr2 (273-447)||(2285845-2286019)
chr2 (292-448)||(8059342-8059498)
chr2 (308-456)||(12756837-12756986)
chr2 (290-390)||(26237957-26238056)
chr2 (309-456)||(26162702-26162847)
chr2 (299-365)||(7072644-7072710)
chr2 (318-416)||(4555250-4555350)
[»] chr7 (21 HSPs)
chr7 (270-448)||(5555467-5555645)
chr7 (270-448)||(3114105-3114283)
chr7 (274-456)||(36630800-36630983)
chr7 (274-448)||(8394109-8394283)
chr7 (270-446)||(14777118-14777294)
chr7 (290-456)||(37002144-37002311)
chr7 (290-448)||(8867740-8867898)
chr7 (290-456)||(34389056-34389223)
chr7 (294-456)||(26624749-26624913)
chr7 (299-456)||(35090177-35090335)
chr7 (309-456)||(40920003-40920151)
chr7 (321-448)||(38638245-38638372)
chr7 (290-448)||(33685564-33685722)
chr7 (297-456)||(43184468-43184628)
chr7 (290-456)||(7002725-7002892)
chr7 (290-456)||(7048596-7048763)
chr7 (308-456)||(36658199-36658348)
chr7 (349-416)||(10868514-10868583)
chr7 (277-365)||(26502797-26502885)
chr7 (277-365)||(26589829-26589917)
chr7 (290-335)||(10876829-10876874)
[»] chr5 (23 HSPs)
chr5 (273-448)||(10033910-10034085)
chr5 (273-448)||(13817960-13818135)
chr5 (274-455)||(1776377-1776559)
chr5 (270-443)||(36293635-36293808)
chr5 (270-446)||(39434676-39434852)
chr5 (270-448)||(39657515-39657693)
chr5 (270-446)||(26283329-26283505)
chr5 (270-441)||(3155647-3155818)
chr5 (277-456)||(19985926-19986106)
chr5 (268-456)||(37254619-37254808)
chr5 (290-456)||(17332551-17332718)
chr5 (308-446)||(16155015-16155153)
chr5 (320-448)||(16333885-16334013)
chr5 (290-456)||(12278860-12279027)
chr5 (290-456)||(31680367-31680534)
chr5 (304-456)||(33430335-33430488)
chr5 (290-445)||(31501728-31501883)
chr5 (309-456)||(43068896-43069044)
chr5 (292-456)||(36291373-36291538)
chr5 (303-416)||(28801300-28801415)
chr5 (273-326)||(14316641-14316694)
chr5 (269-300)||(16334015-16334046)
chr5 (268-316)||(26543906-26543954)
[»] chr4 (41 HSPs)
chr4 (270-456)||(25930688-25930875)
chr4 (274-456)||(36382346-36382528)
chr4 (270-446)||(20129290-20129466)
chr4 (269-448)||(29319714-29319893)
chr4 (268-446)||(34407295-34407473)
chr4 (270-446)||(26439290-26439466)
chr4 (273-456)||(17511233-17511417)
chr4 (270-446)||(13012168-13012344)
chr4 (270-446)||(47500753-47500929)
chr4 (270-445)||(43143596-43143771)
chr4 (269-446)||(43355883-43356060)
chr4 (293-456)||(3292896-3293060)
chr4 (273-439)||(10352902-10353068)
chr4 (291-445)||(42333788-42333942)
chr4 (290-456)||(30216742-30216909)
chr4 (290-448)||(6690244-6690402)
chr4 (273-448)||(40528996-40529173)
chr4 (273-448)||(50205086-50205261)
chr4 (273-456)||(6235515-6235687)
chr4 (292-456)||(48989330-48989495)
chr4 (291-441)||(30077647-30077797)
chr4 (307-456)||(44156668-44156818)
chr4 (296-456)||(29995983-29996144)
chr4 (325-456)||(1817752-1817884)
chr4 (293-445)||(28877262-28877414)
chr4 (290-444)||(26448053-26448206)
chr4 (318-445)||(35545981-35546108)
chr4 (292-416)||(30109958-30110084)
chr4 (368-445)||(13392893-13392970)
chr4 (368-445)||(13396032-13396109)
chr4 (273-375)||(27363344-27363446)
chr4 (302-387)||(48129978-48130063)
chr4 (292-390)||(45194178-45194276)
chr4 (270-331)||(7769308-7769369)
chr4 (318-383)||(6254572-6254637)
chr4 (290-327)||(49908782-49908819)
chr4 (291-338)||(13392989-13393036)
chr4 (291-338)||(13396128-13396175)
chr4 (290-327)||(5517494-5517531)
chr4 (274-375)||(20113775-20113876)
chr4 (290-327)||(50720476-50720513)
[»] chr6 (12 HSPs)
chr6 (266-448)||(34948767-34948949)
chr6 (270-448)||(13837801-13837979)
chr6 (270-446)||(398597-398773)
chr6 (290-456)||(28996730-28996897)
chr6 (290-456)||(18339106-18339273)
chr6 (296-441)||(29743289-29743434)
chr6 (306-456)||(33229336-33229487)
chr6 (290-375)||(24697899-24697984)
chr6 (290-386)||(31028435-31028531)
chr6 (305-375)||(24695502-24695572)
chr6 (290-326)||(13647017-13647053)
chr6 (305-337)||(3050094-3050126)
[»] chr1 (12 HSPs)
chr1 (270-448)||(7433425-7433603)
chr1 (273-456)||(42310941-42311125)
chr1 (269-446)||(26144234-26144411)
chr1 (277-446)||(32982067-32982236)
chr1 (294-456)||(3828988-3829150)
chr1 (290-448)||(17445313-17445471)
chr1 (268-456)||(35907530-35907719)
chr1 (298-456)||(321377-321536)
chr1 (270-393)||(23313218-23313342)
chr1 (273-416)||(41972314-41972458)
chr1 (290-416)||(33489687-33489815)
chr1 (290-326)||(44352614-44352650)
[»] chr3 (22 HSPs)
chr3 (269-446)||(22968455-22968632)
chr3 (270-446)||(6269437-6269613)
chr3 (270-446)||(19390126-19390302)
chr3 (274-445)||(34084134-34084305)
chr3 (270-446)||(39771770-39771946)
chr3 (270-456)||(11018212-11018399)
chr3 (290-456)||(45182981-45183148)
chr3 (290-456)||(6930894-6931061)
chr3 (273-456)||(40081741-40081922)
chr3 (290-441)||(19565517-19565668)
chr3 (290-441)||(45335875-45336025)
chr3 (269-445)||(6503581-6503757)
chr3 (289-456)||(27935177-27935345)
chr3 (290-456)||(33040953-33041120)
chr3 (36-195)||(44253879-44254036)
chr3 (290-456)||(35514266-35514429)
chr3 (274-345)||(22922141-22922212)
chr3 (205-267)||(44254064-44254126)
chr3 (312-416)||(5135291-5135397)
chr3 (290-339)||(5354709-5354758)
chr3 (290-327)||(6890998-6891035)
chr3 (409-456)||(22922214-22922262)
[»] chr8 (15 HSPs)
chr8 (273-456)||(29728386-29728570)
chr8 (274-448)||(15838270-15838443)
chr8 (273-456)||(3648794-3648978)
chr8 (294-456)||(16788025-16788188)
chr8 (270-445)||(34136837-34137012)
chr8 (290-445)||(4404008-4404163)
chr8 (270-446)||(39914495-39914670)
chr8 (290-456)||(23402108-23402275)
chr8 (290-456)||(36408551-36408718)
chr8 (312-444)||(9877242-9877374)
chr8 (290-445)||(2729208-2729363)
chr8 (322-456)||(42230971-42231104)
chr8 (306-416)||(3435285-3435397)
chr8 (313-383)||(40470567-40470637)
chr8 (290-375)||(10397122-10397207)
[»] scaffold0069 (1 HSPs)
scaffold0069 (270-446)||(17822-17998)
[»] scaffold0002 (1 HSPs)
scaffold0002 (269-446)||(480468-480645)
[»] scaffold2142 (1 HSPs)
scaffold2142 (270-446)||(502-678)
[»] scaffold0502 (1 HSPs)
scaffold0502 (290-456)||(5230-5397)
[»] scaffold0154 (1 HSPs)
scaffold0154 (290-456)||(31480-31647)
[»] scaffold0041 (1 HSPs)
scaffold0041 (309-456)||(52944-53092)


Alignment Details
Target: chr2 (Bit Score: 203; Significance: 1e-111; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 11 - 266
Target Start/End: Original strand, 34220262 - 34220531
Alignment:
Q  11 atcatcatatttattaaacaacacgtatcatacaagacgtacgataggggacaaagacaaaactgtacaaggggcctgaatttgcggtaaccccaaaacc 110  Q
    |||| |||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34220262 atcagcatatttattaaacaaccggtatcatacaagacgtacgataggggacaaagacaaaactgtacaaggggcctgaatttgcggtaaccccaaaacc 34220361  T
Q  111 aaacctaaatctactgtcatgacagcagcactgccgatgccaacacagcaggcagtaaccgcgccagaccccaaactcgcagctgt-------------- 196  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                  
T  34220362 aaacctaaatctactgtcatgacagcagcactgccgatgccaacacagcaggcagtaaccgcgccagaccccaaactcgcagctgtacagcagcacaaaa 34220461  T
Q  197 acaaagcgaaactcccctaatgcaaaagacaatcctttgggttccaactccattcgtataaaagacatgg 266  Q
    |||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||    
T  34220462 acaaagcgaaactcccctaacgcaaaagacaatcatttgggttccaactccattcgtataaaagacatgg 34220531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 270 - 448
Target Start/End: Original strand, 42439966 - 42440144
Alignment:
Q  270 catgggcggttctaccgtatggcgaccccgggcggtcgcccgggctcaatcgataatttttgcacattagactcaatccaaaagtccattaacacattta 369  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| || ||||||| |||||||||||||||    
T  42439966 catgggcggttctaccgtatggcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagactaaacccaaaagcccattaacacattta 42440065  T
Q  370 caaaaagaaaaatttgggcaatctaaaaattgtcacacgcaaataggtattggaattttatttagcacactattgacgg 448  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||| ||| ||||||||||||||||||||||||||    
T  42440066 caaaaagaaaaatttgggcaatctgaaaattgtcacacgcaaataggtcttgcaattttatttagcacactattgacgg 42440144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 141; E-Value: 9e-74
Query Start/End: Original strand, 270 - 446
Target Start/End: Complemental strand, 41251821 - 41251645
Alignment:
Q  270 catgggcggttctaccgtatggcgaccccgggcggtcgcccgggctcaatcgataatttttgcacattagactcaatccaaaagtccattaacacattta 369  Q
    |||||||||||||||||| | | |||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| |||||||||||||||    
T  41251821 catgggcggttctaccgtgtagtgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacattta 41251722  T
Q  370 caaaaagaaaaatttgggcaatctaaaaattgtcacacgcaaataggtattggaattttatttagcacactattgac 446  Q
    |||||||||||||||||||||||| |||||||||||||| |||||||| ||||||||||||||||||||||||||||    
T  41251721 caaaaagaaaaatttgggcaatctgaaaattgtcacacgtaaataggtcttggaattttatttagcacactattgac 41251645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 270 - 448
Target Start/End: Original strand, 18981597 - 18981774
Alignment:
Q  270 catgggcggttctaccgtatggcgaccccgggcggtcgcccgggctcaatcgataatttttgcacattagactcaatccaaaagtccattaacacattta 369  Q
    |||||||||||||||||||||||||||| ||||||||| |||||||| || ||||||||||||||||||||||||| ||||||||||||||| |||||||    
T  18981597 catgggcggttctaccgtatggcgaccc-gggcggtcgtccgggctcgattgataatttttgcacattagactcaacccaaaagtccattaaaacattta 18981695  T
Q  370 caaaaagaaaaatttgggcaatctaaaaattgtcacacgcaaataggtattggaattttatttagcacactattgacgg 448  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||| |||||||    
T  18981696 caaaaagaaaaatttgggcaatttaaaaattgtcacacgcaaataggtcttggaattttatttagcacactgttgacgg 18981774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 264 - 448
Target Start/End: Original strand, 35962689 - 35962873
Alignment:
Q  264 tggaggcatgggcggttctaccgtatggcgaccccgggcggtcgcccgggctcaatcgataatttttgcacattagactcaatccaaaagtccattaaca 363  Q
    |||| |||||||||||||||||||||||||||||| |||||||| |||||||| |||||||||||||||||||||||||||| |||||||   |||||||    
T  35962689 tggaagcatgggcggttctaccgtatggcgaccccaggcggtcgtccgggctcgatcgataatttttgcacattagactcaacccaaaagcttattaaca 35962788  T
Q  364 catttacaaaaagaaaaatttgggcaatctaaaaattgtcacacgcaaataggtattggaattttatttagcacactattgacgg 448  Q
    ||||||||||||||||| |||||||||||| ||||||||||||| ||||||||| ||||||||||||||||||||||||||||||    
T  35962789 catttacaaaaagaaaattttgggcaatctgaaaattgtcacacacaaataggtcttggaattttatttagcacactattgacgg 35962873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 131; E-Value: 9e-68
Query Start/End: Original strand, 270 - 448
Target Start/End: Original strand, 16405580 - 16405758
Alignment:
Q  270 catgggcggttctaccgtatggcgaccccgggcggtcgcccgggctcaatcgataatttttgcacattagactcaatccaaaagtccattaacacattta 369  Q
    |||||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||||||| |||||||||| |||||||  ||||||||||||||    
T  16405580 catgggcggttctaccatatggtgaccctgggcggtcgcccgggctcaatcgataatttttgcacgttagactcaacccaaaagctcattaacacattta 16405679  T
Q  370 caaaaagaaaaatttgggcaatctaaaaattgtcacacgcaaataggtattggaattttatttagcacactattgacgg 448  Q
     |||||||||||||||| |||||| |||||||||||||||||||| || ||||||||||||||||||||||||||||||    
T  16405680 taaaaagaaaaatttggacaatctgaaaattgtcacacgcaaataagtcttggaattttatttagcacactattgacgg 16405758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 131; E-Value: 9e-68
Query Start/End: Original strand, 270 - 448
Target Start/End: Complemental strand, 32127328 - 32127150
Alignment:
Q  270 catgggcggttctaccgtatggcgaccccgggcggtcgcccgggctcaatcgataatttttgcacattagactcaatccaaaagtccattaacacattta 369  Q
    |||||||||||||| |||||||||||||||||||||||||||||||| ||| ||||||||||||||||| |||| | |||||||  ||||||||||||||    
T  32127328 catgggcggttctagcgtatggcgaccccgggcggtcgcccgggctcgatcaataatttttgcacattaaactcgacccaaaagctcattaacacattta 32127229  T
Q  370 caaaaagaaaaatttgggcaatctaaaaattgtcacacgcaaataggtattggaattttatttagcacactattgacgg 448  Q
    ||||||||||||||| |||||||| ||||||||||||||||||||| | ||||||||||||||||||||||||||||||    
T  32127228 caaaaagaaaaatttaggcaatctgaaaattgtcacacgcaaatagatcttggaattttatttagcacactattgacgg 32127150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 270 - 446
Target Start/End: Complemental strand, 17445226 - 17445052
Alignment:
Q  270 catgggcggttctaccgtatggcgaccccgggcggtcgcccgggctcaatcgataatttttgcacattagactcaatccaaaagtccattaacacattta 369  Q
    |||||||||||||||||| |||||||| |||||||||||||| |||| |||||||||||||||||  ||||||||| ||||||| |||||||||||||||    
T  17445226 catgggcggttctaccgtgtggcgacctcgggcggtcgcccgagctcgatcgataatttttgcac--tagactcaacccaaaagcccattaacacattta 17445129  T
Q  370 caaaaagaaaaatttgggcaatctaaaaattgtcacacgcaaataggtattggaattttatttagcacactattgac 446  Q
    |||||||||||||||||||||||| |||||||||||||| |||||||| ||||||||||||||||||||||||||||    
T  17445128 caaaaagaaaaatttgggcaatctgaaaattgtcacacgtaaataggtcttggaattttatttagcacactattgac 17445052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 270 - 446
Target Start/End: Complemental strand, 6403991 - 6403815
Alignment:
Q  270 catgggcggttctaccgtatggcgaccccgggcggtcgcccgggctcaatcgataatttttgcacattagactcaatccaaaagtccattaacacattta 369  Q
    |||||||||||| ||||| | |||||||||||||||||||||||||| |||||||||||||||||||||||||||| | |||||| ||||||||||||||    
T  6403991 catgggcggttccaccgtgtagcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagactcaaccaaaaagttcattaacacattta 6403892  T
Q  370 caaaaagaaaaatttgggcaatctaaaaattgtcacacgcaaataggtattggaattttatttagcacactattgac 446  Q
     ||||||||||||||||||||||| |||||||||||||| |||||||| |||||||||||||| |||||||||||||    
T  6403891 taaaaagaaaaatttgggcaatctgaaaattgtcacacgtaaataggtcttggaattttatttggcacactattgac 6403815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 274 - 456
Target Start/End: Complemental strand, 31581805 - 31581622
Alignment:
Q  274 ggcggttctaccgtatggcgaccccgggcggtcgcccgggctcaatcgataatttttgcacattagactcaatccaaaagtccattaacacatttacaaa 373  Q
    ||||||||||| ||||||||||| ||||||||||||| ||||| | ||||| |||||||| ||||||||||  ||||||| |||||||||||||||||||    
T  31581805 ggcggttctactgtatggcgaccacgggcggtcgcccaggctcgagcgatactttttgcatattagactcatcccaaaagcccattaacacatttacaaa 31581706  T
Q  374 aagaaaaatttgggcaatctaaaaattgtcacacgcaaataggtattggaattttatttagcacactattgac-ggttcatctc 456  Q
    |||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||    
T  31581705 aagaaaaatttgggcaatctgaaaattgtcacacgcaaataggtcttggaattttatttagcacactattgacgggttcatctc 31581622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 270 - 427
Target Start/End: Complemental strand, 2958287 - 2958131
Alignment:
Q  270 catgggcggttctaccgtatggcgaccccgggcggtcgcccgggctcaatcgataatttttgcacattagactcaatccaaaagtccattaacacattta 369  Q
    |||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| ||||||||||||||| ||||||| |||||||||||||||    
T  2958287 catgggcggttctaccgtatggcgaccccgggcggtcgtccgggctcgatcgataatttt-gcacattagactcaacccaaaagcccattaacacattta 2958189  T
Q  370 caaaaagaaaaatttgggcaatctaaaaattgtcacacgcaaataggtattggaattt 427  Q
    |||| ||||||||||||| ||||| ||||||||||||||||||||||| |||||||||    
T  2958188 caaagagaaaaatttgggtaatctgaaaattgtcacacgcaaataggtcttggaattt 2958131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 290 - 456
Target Start/End: Complemental strand, 44084770 - 44084603
Alignment:
Q  290 ggcgaccccgggcggtcgcccgggctcaatcgataatttttgcacattagactcaatccaaaagtccattaacacatttacaaaaagaaaaatttgggca 389  Q
    ||||||||||||| ||||||||||||| ||||||||||||||||||||| || |||||||||||| |||||||||| |||||||||||||||||||||||    
T  44084770 ggcgaccccgggcagtcgcccgggctcgatcgataatttttgcacattaaacccaatccaaaagttcattaacacacttacaaaaagaaaaatttgggca 44084671  T
Q  390 atctaaaaattgtcacacgcaaataggtattggaattttatttagcacactattgac-ggttcatctc 456  Q
    |||| |||||| ||| |||||||||||| |  ||||||||||||||||||||||||| ||||||||||    
T  44084670 atctgaaaattctcatacgcaaataggtctcagaattttatttagcacactattgacgggttcatctc 44084603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 290 - 456
Target Start/End: Original strand, 45418583 - 45418750
Alignment:
Q  290 ggcgaccccgggcggtcgcccgggctcaatcgataatttttgcacattagactcaatccaaaagtccattaacacatttacaaaaagaaaaatttgggca 389  Q
    ||||||||||||||||||||||||||| ||||||||||||||| |||||||  ||| ||||||| | ||||||||| |||||||||||||||||||||||    
T  45418583 ggcgaccccgggcggtcgcccgggctcgatcgataatttttgcgcattagatccaacccaaaagccaattaacacacttacaaaaagaaaaatttgggca 45418682  T
Q  390 atctaaaaattgtcacacgcaaataggtattggaattttatttagcacactattgac-ggttcatctc 456  Q
    |||| |||||| |||||||||||||||| |  ||||||||||||||||||||||||| ||||||||||    
T  45418683 atctgaaaattctcacacgcaaataggtctctgaattttatttagcacactattgacgggttcatctc 45418750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 290 - 448
Target Start/End: Original strand, 8147351 - 8147510
Alignment:
Q  290 ggcgaccccgggcggtcgcccgggctcaatcgataatttttgcacattagactcaatccaaaagtccattaacacatttacaaaaagaaaaatttgggca 389  Q
    ||||||||||||||||||||||||||| ||||||||| |||||||||||||| |||  |||||||| ||||||||| |||||||||||||||||||||||    
T  8147351 ggcgaccccgggcggtcgcccgggctcgatcgataatctttgcacattagacccaactcaaaagtcaattaacacacttacaaaaagaaaaatttgggca 8147450  T
Q  390 atct-aaaaattgtcacacgcaaataggtattggaattttatttagcacactattgacgg 448  Q
    |||| ||||||| |||||||||||||| | | ||||||||||||| ||||||||||||||    
T  8147451 atctgaaaaattctcacacgcaaatagatctcggaattttatttaacacactattgacgg 8147510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 296 - 448
Target Start/End: Original strand, 771005 - 771157
Alignment:
Q  296 cccgggcggtcgcccgggctcaatcgataatttttgcacattagactcaatccaaaagtccattaacacatttacaaaaagaaaaatttgggcaatctaa 395  Q
    ||||||||||||||||||||| |||||||| ||||||||||||||| ||| | ||||| ||||||||||| ||||||||||||||||||||||||||| |    
T  771005 cccgggcggtcgcccgggctcgatcgataacttttgcacattagacccaaccaaaaagcccattaacacacttacaaaaagaaaaatttgggcaatctga 771104  T
Q  396 aaattgtcacacgcaaataggtattggaattttatttagcacactattgacgg 448  Q
    ||||| |||||||||||||||| | |||| ||||||||||||| |||||||||    
T  771105 aaattctcacacgcaaataggtctcggaactttatttagcacattattgacgg 771157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 273 - 447
Target Start/End: Original strand, 2285845 - 2286019
Alignment:
Q  273 gggcggttctaccgtatggcgaccccgggcggtcgcccgggctcaatcgataatttttgcacattagactcaatccaaaagtccattaacacatttacaa 372  Q
    |||||||||||||| ||||||| | ||| |||||   | || || ||||||||||||||||||||| |  ||| | ||||||| |||||||||||||| |    
T  2285845 gggcggttctaccggatggcgatctcggacggtcattcaggttcgatcgataatttttgcacattaaatccaaccaaaaagtctattaacacatttacga 2285944  T
Q  373 aaagaaaaatttgggcaatctaaaaattgtcacacgcaaataggtattggaattttatttagcacactattgacg 447  Q
    || |||||||||| ||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  2285945 aaggaaaaatttgagcaatctgaaaattgtcacacgcaaataggttttggaattttatttagcacactattgacg 2286019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 292 - 448
Target Start/End: Complemental strand, 8059498 - 8059342
Alignment:
Q  292 cgaccccgggcggtcgcccgggctcaatcgataatttttgcacattagactcaatccaaaagtccattaacacatttacaaaaagaaaaatttgggcaat 391  Q
    ||||||||| || |||||| ||||||||||||||||||||||||||||| |||| ||||||| | ||||||||| |||||||||||||||||||| ||||    
T  8059498 cgaccccggccgatcgcccaggctcaatcgataatttttgcacattagagtcaacccaaaagccaattaacacacttacaaaaagaaaaatttggccaat 8059399  T
Q  392 ctaaaaattgtcacacgcaaataggtattggaattttatttagcacactattgacgg 448  Q
     | |||||| |||||| ||||| ||| | ||||||||||||||||||| ||||||||    
T  8059398 ttgaaaattctcacacacaaatcggtctcggaattttatttagcacacaattgacgg 8059342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 308 - 456
Target Start/End: Complemental strand, 12756986 - 12756837
Alignment:
Q  308 cccgggctcaatcgataatttttgcacattagactcaatccaaaagtccattaacacatttacaaaaagaaaaatttgggcaatctaaaaattgtcacac 407  Q
    |||||| || ||||||||||||||| |||||||| ||| ||||||| | ||||||||| ||||||||||||||||||| ||||||| |||||| ||||||    
T  12756986 cccgggttcgatcgataatttttgcgcattagacccaacccaaaagccaattaacacacttacaaaaagaaaaatttgagcaatctgaaaattctcacac 12756887  T
Q  408 gcaaataggtattggaattttatttagcacactattgac-ggttcatctc 456  Q
    ||||||| || | |||||||||||||||||||||||||| ||||||||||    
T  12756886 gcaaataagtctcggaattttatttagcacactattgacgggttcatctc 12756837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 290 - 390
Target Start/End: Original strand, 26237957 - 26238056
Alignment:
Q  290 ggcgaccccgggcggtcgcccgggctcaatcgataatttttgcacattagactcaatccaaaagtccattaacacatttacaaaaagaaaaatttgggca 389  Q
    ||||||||||||||||||||||||||| ||||||| |||||||| ||||||  ||| ||||||||||||||||||| |||||||||||||||||||||||    
T  26237957 ggcgaccccgggcggtcgcccgggctcgatcgata-tttttgcaaattagatgcaaaccaaaagtccattaacacacttacaaaaagaaaaatttgggca 26238055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 309 - 456
Target Start/End: Complemental strand, 26162847 - 26162702
Alignment:
Q  309 ccgggctcaatcgataatttttgcacattagactcaatccaaaagtccattaacacatttacaaaaagaaaaatttgggcaatctaaaaattgtcacacg 408  Q
    ||||||||  |||||||||||| ||||||| | |||| ||||||  ||||||||||| |||||||||||||||||||||||||||||||||| ||| ||     
T  26162847 ccgggctccttcgataatttttacacattaaattcaacccaaaaacccattaacacacttacaaaaagaaaaatttgggcaatctaaaaattctcaaaca 26162748  T
Q  409 caaataggtattggaattttatttagcacactattgac-ggttcatctc 456  Q
    ||||||||| | |||   |||||||||||| ||||||| ||||||||||    
T  26162747 caaataggtctcgga---ttatttagcacattattgacgggttcatctc 26162702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 299 - 365
Target Start/End: Complemental strand, 7072710 - 7072644
Alignment:
Q  299 gggcggtcgcccgggctcaatcgataatttttgcacattagactcaatccaaaagtccattaacaca 365  Q
    |||||||||||||||||| |||||||||||||  |||||| |||||| ||||||| |||||||||||    
T  7072710 gggcggtcgcccgggctcgatcgataatttttttacattaaactcaacccaaaagcccattaacaca 7072644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 318 - 416
Target Start/End: Complemental strand, 4555350 - 4555250
Alignment:
Q  318 atcgataatttttgcacattagactcaatccaaaagtccattaacacatttacaaaaagaaaaatttgggc--aatctaaaaattgtcacacgcaaatag 415  Q
    ||||||||||||||||||| | || ||| |||||||  | |||||||| |||||||||||||| |||||||  ||||| |||||| ||||||| ||||||    
T  4555350 atcgataatttttgcacatcaaacccaacccaaaagctcgttaacacacttacaaaaagaaaattttgggcaaaatctgaaaattctcacacgtaaatag 4555251  T
Q  416 g 416  Q
    |    
T  4555250 g 4555250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 151; Significance: 1e-79; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 270 - 448
Target Start/End: Original strand, 5555467 - 5555645
Alignment:
Q  270 catgggcggttctaccgtatggcgaccccgggcggtcgcccgggctcaatcgataatttttgcacattagactcaatccaaaagtccattaacacattta 369  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| |||||||| ||||||    
T  5555467 catgggcggttctaccgtatggcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacgcattta 5555566  T
Q  370 caaaaagaaaaatttgggcaatctaaaaattgtcacacgcaaataggtattggaattttatttagcacactattgacgg 448  Q
    |||||||||||||||||||||||| ||||||||||||| ||||||||| ||||||||||||||||||||||||||||||    
T  5555567 caaaaagaaaaatttgggcaatctgaaaattgtcacacacaaataggtcttggaattttatttagcacactattgacgg 5555645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 270 - 448
Target Start/End: Complemental strand, 3114283 - 3114105
Alignment:
Q  270 catgggcggttctaccgtatggcgaccccgggcggtcgcccgggctcaatcgataatttttgcacattagactcaatccaaaagtccattaacacattta 369  Q
    |||||||||||||||||||||| |||||||| ||||||||||||||| |||||||||||||||||||||||||||| ||||||| |||||||||||||||    
T  3114283 catgggcggttctaccgtatggtgaccccggacggtcgcccgggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacattta 3114184  T
Q  370 caaaaagaaaaatttgggcaatctaaaaattgtcacacgcaaataggtattggaattttatttagcacactattgacgg 448  Q
    |||||||||||||||||||||||| ||||||||||||| ||||||||| ||||||||||||||||||||||||||||||    
T  3114183 caaaaagaaaaatttgggcaatctgaaaattgtcacacacaaataggtcttggaattttatttagcacactattgacgg 3114105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 274 - 456
Target Start/End: Original strand, 36630800 - 36630983
Alignment:
Q  274 ggcggttctaccgtatggcgaccccgggcggtcgcccgggctcaatcgataatttttgcacattagactcaatccaaaagtccattaacacatttacaaa 373  Q
    ||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| |||||| | |||||||||||||||||||||||||    
T  36630800 ggcggttctaccgtatggcgaccccggacggtcgcccgggctcgatcgataatttttgcacattaaactcaaccaaaaagtccattaacacatttacaaa 36630899  T
Q  374 aagaaaaatttgggcaatctaaaaattgtcacacgcaaataggtattggaattttatttagcacactattgac-ggttcatctc 456  Q
    |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| |||||||||||||||| ||||||||||    
T  36630900 aagaaaaatttgggcaatctgaaaattgtcacacgcaaataggtcttggaattttagttagcacactattgacgggttcatctc 36630983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 274 - 448
Target Start/End: Original strand, 8394109 - 8394283
Alignment:
Q  274 ggcggttctaccgtatggcgaccccgggcggtcgcccgggctcaatcgataatttttgcacattagactcaatccaaaagtccattaacacatttacaaa 373  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| | |||||||||||||||||||||||||    
T  8394109 ggcggttctaccgtatggcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattaaactcaaccaaaaagtccattaacacatttacaaa 8394208  T
Q  374 aagaaaaatttgggcaatctaaaaattgtcacacgcaaataggtattggaattttatttagcacactattgacgg 448  Q
    | |||||||||||||||||| |||||||||||||| |||||||| ||||||||||||||||||||||||||||||    
T  8394209 aggaaaaatttgggcaatctgaaaattgtcacacgtaaataggtcttggaattttatttagcacactattgacgg 8394283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 270 - 446
Target Start/End: Complemental strand, 14777294 - 14777118
Alignment:
Q  270 catgggcggttctaccgtatggcgaccccgggcggtcgcccgggctcaatcgataatttttgcacattagactcaatccaaaagtccattaacacattta 369  Q
    |||||||||||||||||| | |||| ||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||  ||||||||||||||    
T  14777294 catgggcggttctaccgtgtagcgatcccgggcggtcgcccgggctcgatcgataatttttgcacattagactcaacccaaaagctcattaacacattta 14777195  T
Q  370 caaaaagaaaaatttgggcaatctaaaaattgtcacacgcaaataggtattggaattttatttagcacactattgac 446  Q
    |||||||||||||||||||||||| |||||||||||||| |||||||| ||||||||||||||||||||||||||||    
T  14777194 caaaaagaaaaatttgggcaatctgaaaattgtcacacgtaaataggtcttggaattttatttagcacactattgac 14777118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 290 - 456
Target Start/End: Complemental strand, 37002311 - 37002144
Alignment:
Q  290 ggcgaccccgggcggtcgcccgggctcaatcgataatttttgcacattagactcaatccaaaagtccattaacacatttacaaaaagaaaaatttgggca 389  Q
    ||||||||||||||||||  ||| ||| |||||||||||||||||||||||| ||||||||||||| ||||||||| |||||||||||||||||||||||    
T  37002311 ggcgaccccgggcggtcgttcggtctcgatcgataatttttgcacattagacccaatccaaaagtcaattaacacacttacaaaaagaaaaatttgggca 37002212  T
Q  390 atctaaaaattgtcacacgcaaataggtattggaattttatttagcacactattgac-ggttcatctc 456  Q
    |||| |||||| |||||||||||||||| |||||||||||||||||||||||||||| ||||||||||    
T  37002211 atctgaaaattctcacacgcaaataggtcttggaattttatttagcacactattgacgggttcatctc 37002144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 290 - 448
Target Start/End: Complemental strand, 8867898 - 8867740
Alignment:
Q  290 ggcgaccccgggcggtcgcccgggctcaatcgataatttttgcacattagactcaatccaaaagtccattaacacatttacaaaaagaaaaatttgggca 389  Q
    ||||||||||||||||||||||||||| |||||||||||||||| ||||||| ||||||||||| | ||||| |||||||||||||||||||||||||||    
T  8867898 ggcgaccccgggcggtcgcccgggctcgatcgataatttttgcatattagacccaatccaaaagccaattaatacatttacaaaaagaaaaatttgggca 8867799  T
Q  390 atctaaaaattgtcacacgcaaataggtattggaattttatttagcacactattgacgg 448  Q
    |||  |||||| |||||||||||||||| | ||||||||||||||||||||||||||||    
T  8867798 atcggaaaattttcacacgcaaataggtctcggaattttatttagcacactattgacgg 8867740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 290 - 456
Target Start/End: Complemental strand, 34389223 - 34389056
Alignment:
Q  290 ggcgaccccgggcggtcgcccgggctcaatcgataatttttgcacattagactcaatccaaaagtccattaacacatttacaaaaagaaaaatttgggca 389  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| |||||||   ||||||||| |||||||||||||||||||||||    
T  34389223 ggcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagacccaacccaaaagctaattaacacacttacaaaaagaaaaatttgggca 34389124  T
Q  390 atctaaaaattgtcacacgcaaataggtattggaattttatttagcacactattgac-ggttcatctc 456  Q
    |||| |||||| |||||||||||||||| | |||||||||||||||||| ||| ||| ||||||||||    
T  34389123 atctgaaaattctcacacgcaaataggtctcggaattttatttagcacattatcgacgggttcatctc 34389056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 294 - 456
Target Start/End: Original strand, 26624749 - 26624913
Alignment:
Q  294 accccgggcggtcgcccgggctcaat-cgataatttttgcacattagactcaatccaaaagtccattaacacatttacaaaaagaaaaatttgggcaatc 392  Q
    |||||||||||||||| |||||| || |||||||||||||| ||||||| ||||||||||||  ||||||||| ||||||||||||||||||||||||||    
T  26624749 accccgggcggtcgcctgggctcgattcgataatttttgcatattagacccaatccaaaagttaattaacacacttacaaaaagaaaaatttgggcaatc 26624848  T
Q  393 taaaaattgtcacacgcaaataggtattggaattttatttagcacactattgac-ggttcatctc 456  Q
    | |||||| |||||||||||||||| | |||||||||||||||||||||||||| ||||||||||    
T  26624849 tgaaaattctcacacgcaaataggtctcggaattttatttagcacactattgacgggttcatctc 26624913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 299 - 456
Target Start/End: Original strand, 35090177 - 35090335
Alignment:
Q  299 gggcggtcgcccgggctcaatcgataatttttgcacattagactcaatccaaaagtccattaacacatttacaaaaagaaaaatttgggcaatctaaaaa 398  Q
    |||||||||||||||||| ||| |||||||||||||||||||| ||| ||||||| | ||||||||| ||||||||||||||||||||| ||||| ||||    
T  35090177 gggcggtcgcccgggctcgatcaataatttttgcacattagacccaacccaaaagccaattaacacacttacaaaaagaaaaatttgggtaatctgaaaa 35090276  T
Q  399 ttgtcacacgcaaataggtattggaattttatttagcacactattgacgg-ttcatctc 456  Q
    || |||||||||||||||| | |||||||||||||||||||||||||||| ||||||||    
T  35090277 ttctcacacgcaaataggtctcggaattttatttagcacactattgacggattcatctc 35090335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 309 - 456
Target Start/End: Complemental strand, 40920151 - 40920003
Alignment:
Q  309 ccgggctcaatcgataatttttgcacattagactcaatccaaaagtccattaacacatttacaaaaagaaaaatttgggcaatctaaaaattgtcacacg 408  Q
    |||||||| ||||||||||||||||||||||| | || ||||||| | |||||||||||||||||||||||||||||| |||||| |||||| ||||| |    
T  40920151 ccgggctcgatcgataatttttgcacattagatttaacccaaaagccaattaacacatttacaaaaagaaaaatttggacaatctgaaaattctcacatg 40920052  T
Q  409 caaataggtattggaattttatttagcacactattgac-ggttcatctc 456  Q
    ||||||||| | |||||||||||||||||||||||||| ||||||||||    
T  40920051 caaataggtctcggaattttatttagcacactattgacgggttcatctc 40920003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 321 - 448
Target Start/End: Complemental strand, 38638372 - 38638245
Alignment:
Q  321 gataatttttgcacattagactcaatccaaaagtccattaacacatttacaaaaagaaaaatttgggcaatctaaaaattgtcacacgcaaataggtatt 420  Q
    ||||||||||||||||||||  ||| ||||||||| ||||||||| ||||||||||||||||||||||||||| |||||| |||||||||||||||| |     
T  38638372 gataatttttgcacattagatccaacccaaaagtcaattaacacacttacaaaaagaaaaatttgggcaatctgaaaattctcacacgcaaataggtctc 38638273  T
Q  421 ggaattttatttagcacactattgacgg 448  Q
    ||||||||||||||||||||||||||||    
T  38638272 ggaattttatttagcacactattgacgg 38638245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 290 - 448
Target Start/End: Original strand, 33685564 - 33685722
Alignment:
Q  290 ggcgaccccgggcggtcgcccgggctcaatcgataatttttgcacattagactcaatccaaaagtccattaacacatttacaaaaagaaaaatttgggca 389  Q
    ||||||||| ||| ||||| ||||||| ||||||||||||||||||||| || ||| ||||||| ||||||||||| |||||||||||||||||||||||    
T  33685564 ggcgaccccaggcagtcgctcgggctcgatcgataatttttgcacattaaacccaacccaaaagcccattaacacacttacaaaaagaaaaatttgggca 33685663  T
Q  390 atctaaaaattgtcacacgcaaataggtattggaattttatttagcacactattgacgg 448  Q
    |||| |||||| ||| ||||||||| || |   ||||||||||||||||||||||||||    
T  33685664 atctgaaaattctcatacgcaaatatgtctcataattttatttagcacactattgacgg 33685722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 297 - 456
Target Start/End: Complemental strand, 43184628 - 43184468
Alignment:
Q  297 ccgggcggtcgcccgggctcaatcgataatttttgcacattagactcaatccaaaagtccattaacacatttacaaaaagaaaaatttgggcaatctaaa 396  Q
    |||||||||||| ||||||| ||||||||||||| | ||| ||||| || ||||||| | ||||||| | ||||||||||||||||||||||||||| ||    
T  43184628 ccgggcggtcgctcgggctcgatcgataatttttacgcatcagacttaacccaaaagccaattaacatacttacaaaaagaaaaatttgggcaatctgaa 43184529  T
Q  397 aattgtcacacgcaaataggtattggaattttatttagcacactattgac-ggttcatctc 456  Q
    |||| |||||||||||||||| |  ||||||||||||||||||||||||| ||||||||||    
T  43184528 aattctcacacgcaaataggtctctgaattttatttagcacactattgacgggttcatctc 43184468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 290 - 456
Target Start/End: Original strand, 7002725 - 7002892
Alignment:
Q  290 ggcgaccccgggcggtcgcccgggctcaatcgataatttttgcacattagactcaatccaaaagtccattaacacatttacaaaaagaaaaatttgggca 389  Q
    |||||||||| |||||||||||||||| |||||  ||||||  |||||| || ||| ||||||| | |||||||||  |||||||| |||||||||| ||    
T  7002725 ggcgaccccgagcggtcgcccgggctcgatcgacgatttttctacattacacccaacccaaaagccaattaacacacatacaaaaataaaaatttggaca 7002824  T
Q  390 atctaaaaattgtcacacgcaaataggtattggaattttatttagcacactattgac-ggttcatctc 456  Q
    ||||||||||| ||||||||||||||||   |||||||||||||||||||||||||| ||||||||||    
T  7002825 atctaaaaattctcacacgcaaataggtcacggaattttatttagcacactattgacgggttcatctc 7002892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 290 - 456
Target Start/End: Original strand, 7048596 - 7048763
Alignment:
Q  290 ggcgaccccgggcggtcgcccgggctcaatcgataatttttgcacattagactcaatccaaaagtccattaacacatttacaaaaagaaaaatttgggca 389  Q
    |||||||||| |||||||||||||||| |||||  ||||||  |||||| || ||| ||||||| | |||||||||  |||||||| |||||||||| ||    
T  7048596 ggcgaccccgagcggtcgcccgggctcgatcgacgatttttctacattacacccaacccaaaagccaattaacacacatacaaaaataaaaatttggaca 7048695  T
Q  390 atctaaaaattgtcacacgcaaataggtattggaattttatttagcacactattgac-ggttcatctc 456  Q
    ||||||||||| ||||||||||||||||   |||||||||||||||||||||||||| ||||||||||    
T  7048696 atctaaaaattctcacacgcaaataggtcacggaattttatttagcacactattgacgggttcatctc 7048763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 308 - 456
Target Start/End: Original strand, 36658199 - 36658348
Alignment:
Q  308 cccgggctcaatcgataatttttgcacattagactcaatccaaaagtccattaacacatttacaaaaagaaaaatttgggcaatctaaaaattgtcacac 407  Q
    ||||| ||| |||||||||||||||||||| ||| ||| | ||||| | ||||||| | | ||||||| ||||||||||||||||| |||||| ||||||    
T  36658199 cccggactcgatcgataatttttgcacattggacccaaccgaaaagccaattaacatactaacaaaaataaaaatttgggcaatctgaaaattctcacac 36658298  T
Q  408 gcaaataggtattggaattttatttagcacactattgac-ggttcatctc 456  Q
    |||||||||| | |||||||||||||||||||||||||| ||||||||||    
T  36658299 gcaaataggtctcggaattttatttagcacactattgacgggttcatctc 36658348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 349 - 416
Target Start/End: Complemental strand, 10868583 - 10868514
Alignment:
Q  349 aaaagtccattaacacatttacaaaaagaaaaatttgggc--aatctaaaaattgtcacacgcaaatagg 416  Q
    ||||| ||||||||||||||||||||||||||||||||||  ||||| |||||| |||| ||||||||||    
T  10868583 aaaagcccattaacacatttacaaaaagaaaaatttgggcaaaatctgaaaattctcacgcgcaaatagg 10868514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 277 - 365
Target Start/End: Original strand, 26502797 - 26502885
Alignment:
Q  277 ggttctaccgtatggcgaccccgggcggtcgcccgggctcaatcgataatttttgcacattagactcaatccaaaagtccattaacaca 365  Q
    ||||| ||||| |||||||||| ||| ||||||||||||| |||||   |||||||| ||||  | ||| ||||||| |||||||||||    
T  26502797 ggttccaccgtgtggcgaccccaggcagtcgcccgggctcgatcgaatttttttgcatattaagcccaacccaaaagcccattaacaca 26502885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 277 - 365
Target Start/End: Complemental strand, 26589917 - 26589829
Alignment:
Q  277 ggttctaccgtatggcgaccccgggcggtcgcccgggctcaatcgataatttttgcacattagactcaatccaaaagtccattaacaca 365  Q
    ||||| ||||| |||||||||| ||| ||||||||||||| |||||   |||||||| ||||  | ||| ||||||| |||||||||||    
T  26589917 ggttccaccgtgtggcgaccccaggcagtcgcccgggctcgatcgaatttttttgcatattaagcccaacccaaaagcccattaacaca 26589829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 290 - 335
Target Start/End: Complemental strand, 10876874 - 10876829
Alignment:
Q  290 ggcgaccccgggcggtcgcccgggctcaatcgataatttttgcaca 335  Q
    ||||| |||| | |||||||||||||| ||||||||||||||||||    
T  10876874 ggcgaacccgtgtggtcgcccgggctcgatcgataatttttgcaca 10876829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 148; Significance: 6e-78; HSPs: 23)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 273 - 448
Target Start/End: Original strand, 10033910 - 10034085
Alignment:
Q  273 gggcggttctaccgtatggcgaccccgggcggtcgcccgggctcaatcgataatttttgcacattagactcaatccaaaagtccattaacacatttacaa 372  Q
    |||||||||||||||||||||||||||| || |||||||||||| |||||||||||||||||||||||||||| ||||||| ||||||||||||||||||    
T  10033910 gggcggttctaccgtatggcgaccccggacgatcgcccgggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacatttacaa 10034009  T
Q  373 aaagaaaaatttgggcaatctaaaaattgtcacacgcaaataggtattggaattttatttagcacactattgacgg 448  Q
    ||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  10034010 aaagaaaaatttgggcaatctgaaaattgtcacacgcaaataggtcttggaattttatttagcacactattgacgg 10034085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 273 - 448
Target Start/End: Original strand, 13817960 - 13818135
Alignment:
Q  273 gggcggttctaccgtatggcgaccccgggcggtcgcccgggctcaatcgataatttttgcacattagactcaatccaaaagtccattaacacatttacaa 372  Q
    |||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||| ||||||| ||||||||||||||||||    
T  13817960 gggcggttctaccgtatggcgaccccgggcggtcgctcgggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacatttacaa 13818059  T
Q  373 aaagaaaaatttgggcaatctaaaaattgtcacacgcaaataggtattggaattttatttagcacactattgacgg 448  Q
    ||||||||||||||||||||| ||||||||||||||||||||||| |||||| |||||||||||||||||||||||    
T  13818060 aaagaaaaatttgggcaatctgaaaattgtcacacgcaaataggtcttggaaatttatttagcacactattgacgg 13818135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 131; E-Value: 9e-68
Query Start/End: Original strand, 274 - 455
Target Start/End: Complemental strand, 1776559 - 1776377
Alignment:
Q  274 ggcggttctaccgtatggcgaccccgggcggtcgcccgggctcaatcgataatttttgcacattagactcaatccaaaagtccattaacacatttacaaa 373  Q
    ||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||| |||||| | |||| | |||||||||||||||||||||||||    
T  1776559 ggcggttctaccgtatgacgaccccgggcggtcgcccgggctcgatcgataatttttgtacattaaagtcaaccaaaaagtccattaacacatttacaaa 1776460  T
Q  374 aagaaaaatttgggcaatctaaaaattgtcacacgcaaataggtattggaattttatttagcacactattgac-ggttcatct 455  Q
    |||||||||||||||||| | ||||||||||||||||||||||| |||||||||||||||||||||||| ||| |||||||||    
T  1776459 aagaaaaatttgggcaatttgaaaattgtcacacgcaaataggtcttggaattttatttagcacactatcgacaggttcatct 1776377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 270 - 443
Target Start/End: Complemental strand, 36293808 - 36293635
Alignment:
Q  270 catgggcggttctaccgtatggcgaccccgggcggtcgcccgggctcaatcgataatttttgcacattagactcaatccaaaagtccattaacacattta 369  Q
    |||||||||||||||||| ||||||||||| ||||||| |||| ||| |||||||||||||| ||||||||||||| ||||||| |||||||||||||||    
T  36293808 catgggcggttctaccgtgtggcgaccccgagcggtcgtccggactcgatcgataatttttgtacattagactcaacccaaaagcccattaacacattta 36293709  T
Q  370 caaaaagaaaaatttgggcaatctaaaaattgtcacacgcaaataggtattggaattttatttagcacactatt 443  Q
    |||||||||||||||||||||||| |||||||||||||| |||||||| |||||||||||||||||||||||||    
T  36293708 caaaaagaaaaatttgggcaatctgaaaattgtcacacgtaaataggtcttggaattttatttagcacactatt 36293635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 270 - 446
Target Start/End: Original strand, 39434676 - 39434852
Alignment:
Q  270 catgggcggttctaccgtatggcgaccccgggcggtcgcccgggctcaatcgataatttttgcacattagactcaatccaaaagtccattaacacattta 369  Q
    |||||||||||||||||| ||||||||| |||||||||||||||||| ||||||||||||| |||||||||||||| ||||||| |||||||||||||||    
T  39434676 catgggcggttctaccgtgtggcgaccctgggcggtcgcccgggctcgatcgataattttttcacattagactcaacccaaaagcccattaacacattta 39434775  T
Q  370 caaaaagaaaaatttgggcaatctaaaaattgtcacacgcaaataggtattggaattttatttagcacactattgac 446  Q
    ||||| |||||||||||||||||| |||||||||||| | |||||||| || |||||||||||||||||||||||||    
T  39434776 caaaatgaaaaatttgggcaatctgaaaattgtcacatgtaaataggtctttgaattttatttagcacactattgac 39434852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 270 - 448
Target Start/End: Complemental strand, 39657693 - 39657515
Alignment:
Q  270 catgggcggttctaccgtatggcgaccccgggcggtcgcccgggctcaatcgataatttttgcacattagactcaatccaaaagtccattaacacattta 369  Q
    |||||||||||||||  |||||||||||| | ||||||  ||||||| || ||||||||||||||||||||||||| |||||||  ||||||||||||||    
T  39657693 catgggcggttctactatatggcgaccccagacggtcgttcgggctcgattgataatttttgcacattagactcaacccaaaagctcattaacacattta 39657594  T
Q  370 caaaaagaaaaatttgggcaatctaaaaattgtcacacgcaaataggtattggaattttatttagcacactattgacgg 448  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  39657593 caaaaagaaaaatttgggcaatctgaaaattgtcacacgcaaataggtcttggaattttatttagcacactattgacgg 39657515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 270 - 446
Target Start/End: Complemental strand, 26283505 - 26283329
Alignment:
Q  270 catgggcggttctaccgtatggcgaccccgggcggtcgcccgggctcaatcgataatttttgcacattagactcaatccaaaagtccattaacacattta 369  Q
    |||||||||||| ||||| | |||||| ||||||||||||||||||| |||||||||||||||||||||||||||| | |||||| ||||||||||||||    
T  26283505 catgggcggttccaccgtgtagcgacctcgggcggtcgcccgggctcgatcgataatttttgcacattagactcaaccaaaaagttcattaacacattta 26283406  T
Q  370 caaaaagaaaaatttgggcaatctaaaaattgtcacacgcaaataggtattggaattttatttagcacactattgac 446  Q
     ||||||||||||||||||||||| |||||||||||||| |||||||| |||||||||||||| |||||||||||||    
T  26283405 taaaaagaaaaatttgggcaatctgaaaattgtcacacgtaaataggtcttggaattttatttggcacactattgac 26283329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 270 - 441
Target Start/End: Complemental strand, 3155818 - 3155647
Alignment:
Q  270 catgggcggttctaccgtatggcgaccccgggcggtcgcccgggctcaatcgataatttttgcacattagactcaatccaaaagtccattaacacattta 369  Q
    |||||||||||||| |||||||||| ||||||||||||| ||||||| ||| |||||||||||||||| ||||||| | |||||||||||||||||||||    
T  3155818 catgggcggttctatcgtatggcgatcccgggcggtcgctcgggctcgatcaataatttttgcacattcgactcaacctaaaagtccattaacacattta 3155719  T
Q  370 caaaaagaaaaatttgggcaatctaaaaattgtcacacgcaaataggtattggaattttatttagcacacta 441  Q
     |||||||||||||||| |||||| ||||||||||||||||||||| | |||||||||||||||||||||||    
T  3155718 taaaaagaaaaatttggacaatctgaaaattgtcacacgcaaatagatcttggaattttatttagcacacta 3155647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 277 - 456
Target Start/End: Original strand, 19985926 - 19986106
Alignment:
Q  277 ggttctaccgtatggcgaccccgggcggtcgcccgggctcaatcgataatttttgcacattagactcaatccaaaagtccattaacacatttacaaaaag 376  Q
    |||| ||||||||| ||||| |||||||||| ||| |||| ||||||||||||||||||||||| |||| |||||||||||||| |||||||||||||||    
T  19985926 ggttttaccgtatgacgacctcgggcggtcgtccgagctcgatcgataatttttgcacattagattcaacccaaaagtccattagcacatttacaaaaag 19986025  T
Q  377 aaaaatttgggcaatctaaaaattgtcacacgcaaataggtattggaattttatttagcacactattgac-ggttcatctc 456  Q
    ||||||||||| |||||||||||| |||||||||||||||| ||| ||||||||||| |||||||||||| ||||||||||    
T  19986026 aaaaatttgggtaatctaaaaattatcacacgcaaataggtcttgaaattttatttaacacactattgacaggttcatctc 19986106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 268 - 456
Target Start/End: Original strand, 37254619 - 37254808
Alignment:
Q  268 ggcatgggcggttctaccgtatggcgaccccgggcggtcgcccgggctcaatcgataatttttgcacattagactcaatccaaaagtccattaacacatt 367  Q
    |||||||||||||  ||||   ||||||||| ||||||||||| ||||| |||||||||||||||||||||||| ||| ||||||||| ||||||||| |    
T  37254619 ggcatgggcggtttcaccgctcggcgaccccaggcggtcgcccaggctcgatcgataatttttgcacattagacccaacccaaaagtcaattaacacact 37254718  T
Q  368 tacaaaaagaaaaatttgggcaatctaaaaattgtcacacgcaaataggtattggaattttatttagcacactattgac-ggttcatctc 456  Q
    |||||||||||||||||||||||||| |||||| |||||||||||||||| | |||||||||||||||||| ||||||| ||||||||||    
T  37254719 tacaaaaagaaaaatttgggcaatctgaaaattctcacacgcaaataggtctcggaattttatttagcacattattgacgggttcatctc 37254808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 290 - 456
Target Start/End: Complemental strand, 17332718 - 17332551
Alignment:
Q  290 ggcgaccccgggcggtcgcccgggctcaatcgataatttttgcacattagactcaatccaaaagtccattaacacatttacaaaaagaaaaatttgggca 389  Q
    |||||||||||||| |||||||||||| |||||||||||||||| ||||||| ||| ||||||| | ||||||||| |||||||||||||||||||||||    
T  17332718 ggcgaccccgggcgttcgcccgggctcgatcgataatttttgcatattagacccaacccaaaagccaattaacacacttacaaaaagaaaaatttgggca 17332619  T
Q  390 atctaaaaattgtcacacgcaaataggtattggaattttatttagcacactattgacgg-ttcatctc 456  Q
    |||| |||||| |||||||||||||||| | |||||||||||||||||||||||||||| ||||||||    
T  17332618 atctgaaaattttcacacgcaaataggtctcggaattttatttagcacactattgacggattcatctc 17332551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 308 - 446
Target Start/End: Original strand, 16155015 - 16155153
Alignment:
Q  308 cccgggctcaatcgataatttttgcacattagactcaatccaaaagtccattaacacatttacaaaaagaaaaatttgggcaatctaaaaattgtcacac 407  Q
    ||||||||| |||||||||||||||||||||||||||| ||||||| ||||||||||||||| |||||||||||||| |||||||| |||||||||||||    
T  16155015 cccgggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacatttataaaaagaaaaatttaggcaatctgaaaattgtcacac 16155114  T
Q  408 gcaaataggtattggaattttatttagcacactattgac 446  Q
    |||||||||| ||||||||||||||||||||||||||||    
T  16155115 gcaaataggtcttggaattttatttagcacactattgac 16155153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 320 - 448
Target Start/End: Complemental strand, 16334013 - 16333885
Alignment:
Q  320 cgataatttttgcacattagactcaatccaaaagtccattaacacatttacaaaaagaaaaatttgggcaatctaaaaattgtcacacgcaaataggtat 419  Q
    ||||||||||||||||||||| |||| ||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |    
T  16334013 cgataatttttgcacattagattcaacccaaaagcccattaacacatttacaaaaagaaaaatttgggcaatctgaaaattgtcacacgcaaataggtct 16333914  T
Q  420 tggaattttatttagcacactattgacgg 448  Q
    |||||||||||||||||||||||||||||    
T  16333913 tggaattttatttagcacactattgacgg 16333885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 290 - 456
Target Start/End: Complemental strand, 12279027 - 12278860
Alignment:
Q  290 ggcgaccccgggcggtcgcccgggctcaatcgataatttttgcacattagactcaatccaaaagtccattaacacatttacaaaaagaaaaatttgggca 389  Q
    ||||| ||||||||||||||||| ||| |||||||||||||||||||||||| ||| ||||| | | ||||||||| |||||||||||||||||||||||    
T  12279027 ggcgatcccgggcggtcgcccggactcgatcgataatttttgcacattagacccaacccaaaggccaattaacacacttacaaaaagaaaaatttgggca 12278928  T
Q  390 atctaaaaattgtcacacgcaaataggtattggaattttatttagcacactattgac-ggttcatctc 456  Q
    |||| |||||| |||||||||||||||| | |||||||||||||||||||||||||| ||||||||||    
T  12278927 atctgaaaattctcacacgcaaataggtctcggaattttatttagcacactattgacaggttcatctc 12278860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 290 - 456
Target Start/End: Original strand, 31680367 - 31680534
Alignment:
Q  290 ggcgaccccgggcggtcgcccgggctcaatcgataatttttgcacattagactcaatccaaaagtccattaacacatttacaaaaagaaaaatttgggca 389  Q
    ||||||||||||||||||||||||||| ||||||||||||| | |||||||| ||| ||||||| | ||||||||| |||||||||||||||||||||||    
T  31680367 ggcgaccccgggcggtcgcccgggctcgatcgataatttttccgcattagacccaacccaaaagccaattaacacacttacaaaaagaaaaatttgggca 31680466  T
Q  390 atctaaaaattgtcacacgcaaataggtattggaattttatttagcacactattgac-ggttcatctc 456  Q
    |||| |||||| ||||| |||||||||| | |||||||||||||||||||||||||| ||||||||||    
T  31680467 atctgaaaattctcacatgcaaataggtctcggaattttatttagcacactattgacgggttcatctc 31680534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 304 - 456
Target Start/End: Original strand, 33430335 - 33430488
Alignment:
Q  304 gtcgcccgggctcaatcgataatttttgcacattagactcaatccaaaagtccattaacacatttacaaaaagaaaaatttgggcaatctaaaaattgtc 403  Q
    ||||||||||||| ||||||||||||||| |||||||| ||| ||||||| | ||||||||| ||||||||||||||||||||||||||| |||||| ||    
T  33430335 gtcgcccgggctcgatcgataatttttgcgcattagacccaacccaaaagccaattaacacacttacaaaaagaaaaatttgggcaatctgaaaattctc 33430434  T
Q  404 acacgcaaataggtattggaattttatttagcacactattgac-ggttcatctc 456  Q
    |||||||||||||| | |||||||||||||||||||||||||| ||||||||||    
T  33430435 acacgcaaataggtctcggaattttatttagcacactattgacgggttcatctc 33430488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 290 - 445
Target Start/End: Complemental strand, 31501883 - 31501728
Alignment:
Q  290 ggcgaccccgggcggtcgcccgggctcaatcgataatttttgcacattagactcaatccaaaagtccattaacacatttacaaaaagaaaaatttgggca 389  Q
    |||||||||||||| | |||||||||| |||||||||||||||||||||||| ||| ||||||| | ||||||||| |||||||||||||||||||||||    
T  31501883 ggcgaccccgggcgattgcccgggctcgatcgataatttttgcacattagacccaacccaaaagccaattaacacacttacaaaaagaaaaatttgggca 31501784  T
Q  390 atctaaaaattgtcacacgcaaataggtattggaattttatttagcacactattga 445  Q
    |||| |||||| || ||||||||||||| | | |||||||||||||||||||||||    
T  31501783 atctgaaaattctcgcacgcaaataggtctcgaaattttatttagcacactattga 31501728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 309 - 456
Target Start/End: Original strand, 43068896 - 43069044
Alignment:
Q  309 ccgggctcaatcgataatttttgcacattagactcaatccaaaagtccattaacacatttacaaaaagaaaaatttgggcaatctaaaaattgtcacacg 408  Q
    |||||||| ||| ||||||||| |||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| | ||| |    
T  43068896 ccgggctcgatcaataattttttcacattagacccaacccaaaagtccattaacacatttacaaaaagaaaaatttgggcaatctgaaaattcttacatg 43068995  T
Q  409 caaataggtattggaattttatttagcacactattgacgg-ttcatctc 456  Q
     ||||| || | |||||||||||||||||||||||| ||| ||||||||    
T  43068996 taaataagtctcggaattttatttagcacactattgccggattcatctc 43069044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 292 - 456
Target Start/End: Original strand, 36291373 - 36291538
Alignment:
Q  292 cgaccccgggcggtcgcccgggctcaatcgataatttttgcacattagactcaatccaaaagtccattaacacatttacaaaaagaaaaatttgggcaat 391  Q
    |||| ||||||||||| ||||| || ||| |||||||||||||||||||   || | |||||| ||||||||||||||||||||||||||||||||||||    
T  36291373 cgactccgggcggtcgtccgggttcgatcaataatttttgcacattagatctaacctaaaagttcattaacacatttacaaaaagaaaaatttgggcaat 36291472  T
Q  392 ctaaaaattgtcacacgcaaataggtattggaattttatttagcacactattgac-ggttcatctc 456  Q
    || |||||| | |||| ||||||||| |  |||||||||||| |||||||||||| ||||||||||    
T  36291473 ctcaaaattattacacacaaataggtctcagaattttatttaacacactattgacgggttcatctc 36291538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 303 - 416
Target Start/End: Original strand, 28801300 - 28801415
Alignment:
Q  303 ggtcgcccgggctcaatcgataatttttgcacattagactcaatccaaaagtccattaacacatttacaaaaagaaaaatttggg--caatctaaaaatt 400  Q
    |||||||| ||||| |||||||||||||||||||||||  ||| ||||||| ||||||||||| |||||||||||||||||||||   ||| | ||||||    
T  28801300 ggtcgccctggctcgatcgataatttttgcacattagatccaaaccaaaagcccattaacacacttacaaaaagaaaaatttgggaaaaatatgaaaatt 28801399  T
Q  401 gtcacacgcaaatagg 416  Q
     |||||||||||||||    
T  28801400 ctcacacgcaaatagg 28801415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 273 - 326
Target Start/End: Original strand, 14316641 - 14316694
Alignment:
Q  273 gggcggttctaccgtatggcgaccccgggcggtcgcccgggctcaatcgataat 326  Q
    |||||||||||||||||||||| | ||||||||||||| ||||| |||||||||    
T  14316641 gggcggttctaccgtatggcgatctcgggcggtcgcccaggctcgatcgataat 14316694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 269 - 300
Target Start/End: Complemental strand, 16334046 - 16334015
Alignment:
Q  269 gcatgggcggttctaccgtatggcgaccccgg 300  Q
    ||||||||||||||||||||||||||||||||    
T  16334046 gcatgggcggttctaccgtatggcgaccccgg 16334015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 268 - 316
Target Start/End: Complemental strand, 26543954 - 26543906
Alignment:
Q  268 ggcatgggcggttctaccgtatggcgaccccgggcggtcgcccgggctc 316  Q
    |||| |||||||| |||||   |||||||||||||||||||||||||||    
T  26543954 ggcaggggcggttttaccgcccggcgaccccgggcggtcgcccgggctc 26543906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 144; Significance: 2e-75; HSPs: 41)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 270 - 456
Target Start/End: Original strand, 25930688 - 25930875
Alignment:
Q  270 catgggcggttctaccgtatggcgaccccgggcggtcgcccgggctcaatcgataatttttgcacattagactcaatccaaaagtccattaacacattta 369  Q
    |||||||||||||||||||||||||||| |||||||||||||||||| ||| ||||||||||||||||| |||||| ||||||| |||||||||||||||    
T  25930688 catgggcggttctaccgtatggcgaccctgggcggtcgcccgggctcgatctataatttttgcacattaaactcaacccaaaagcccattaacacattta 25930787  T
Q  370 caaaaagaaaaatttgggcaatctaaaaattgtcacacgcaaataggtattggaattttatttagcacactattgac-ggttcatctc 456  Q
    |||||||||||||||||||||| | ||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||    
T  25930788 caaaaagaaaaatttgggcaatttgaaaattgtcacacgcaaataggtcttggaattttatttagcacactattgacgggttcatctc 25930875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 136; E-Value: 9e-71
Query Start/End: Original strand, 274 - 456
Target Start/End: Complemental strand, 36382528 - 36382346
Alignment:
Q  274 ggcggttctaccgtatggcgaccccgggcggtcgcccgggctcaatcgataatttttgcacattagactcaatccaaaagtccattaacacatttacaaa 373  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| |||||| | |||||||||||||||||||||| ||    
T  36382528 ggcggttctaccgtatggcgaccccgggcggtcgcccgggctcgatccataatttttgcacattaaactcaaccaaaaagtccattaacacatttac-aa 36382430  T
Q  374 aagaaaaatttgggcaatctaaaaattgtcacacgcaaataggtattggaattttatttagcacactattgac-ggttcatctc 456  Q
    ||||||||||||| |||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||    
T  36382429 aagaaaaatttggacaatctgaaaattgtcacacgcaaataggtcttggaattttatttagcacactattgacgggttcatctc 36382346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 270 - 446
Target Start/End: Original strand, 20129290 - 20129466
Alignment:
Q  270 catgggcggttctaccgtatggcgaccccgggcggtcgcccgggctcaatcgataatttttgcacattagactcaatccaaaagtccattaacacattta 369  Q
    |||||||||||| ||||| | |||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| |||||||||||||||    
T  20129290 catgggcggttccaccgtgtagcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacattta 20129389  T
Q  370 caaaaagaaaaatttgggcaatctaaaaattgtcacacgcaaataggtattggaattttatttagcacactattgac 446  Q
    |||||||||||||||||||||||| |||||||||||||| |||||||| || ||||||||||| |||||||||||||    
T  20129390 caaaaagaaaaatttgggcaatctgaaaattgtcacacgtaaataggtcttagaattttatttggcacactattgac 20129466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 269 - 448
Target Start/End: Complemental strand, 29319893 - 29319714
Alignment:
Q  269 gcatgggcggttctaccgtatggcgaccccgggcggtcgcccgggctcaatcgataatttttgcacattagactcaatccaaaagtccattaacacattt 368  Q
    ||||||||||||||||||||||| |||||| |||||||| || ||||| |||||||||||||||||||||||||||| ||||||  ||||||||||||||    
T  29319893 gcatgggcggttctaccgtatggtgacccctggcggtcgtccaggctcgatcgataatttttgcacattagactcaacccaaaatcccattaacacattt 29319794  T
Q  369 acaaaaagaaaaatttgggcaatctaaaaattgtcacacgcaaataggtattggaattttatttagcacactattgacgg 448  Q
    ||||||||||||||||| ||||||| ||||||||||||| |||||| || ||||||||||||||||||||||||||||||    
T  29319793 acaaaaagaaaaatttgagcaatctgaaaattgtcacacacaaataagtcttggaattttatttagcacactattgacgg 29319714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 268 - 446
Target Start/End: Complemental strand, 34407473 - 34407295
Alignment:
Q  268 ggcatgggcggttctaccgtatggcgaccccgggcggtcgcccgggctcaatcgataatttttgcacattagactcaatccaaaagtccattaacacatt 367  Q
    |||||||||||||| ||||| | ||||||||||||||||||||||||||  ||||||||||||||||||||||||||| ||||||| |||||||||||||    
T  34407473 ggcatgggcggttccaccgtgtagcgaccccgggcggtcgcccgggctcggtcgataatttttgcacattagactcaacccaaaagcccattaacacatt 34407374  T
Q  368 tacaaaaagaaaaatttgggcaatctaaaaattgtcacacgcaaataggtattggaattttatttagcacactattgac 446  Q
    || ||||||||||||||||||||||| |||||||||||||| |||||||| ||| ||||||||||  ||||||||||||    
T  34407373 tataaaaagaaaaatttgggcaatctgaaaattgtcacacgtaaataggtcttgaaattttatttgacacactattgac 34407295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 270 - 446
Target Start/End: Complemental strand, 26439466 - 26439290
Alignment:
Q  270 catgggcggttctaccgtatggcgaccccgggcggtcgcccgggctcaatcgataatttttgcacattagactcaatccaaaagtccattaacacattta 369  Q
    |||||||||||| ||||| | ||||||||||||||||||||||||||  ||||||||||||||||||||||||||| ||||||| |||||||||||||||    
T  26439466 catgggcggttccaccgtgtagcgaccccgggcggtcgcccgggctcggtcgataatttttgcacattagactcaacccaaaagcccattaacacattta 26439367  T
Q  370 caaaaagaaaaatttgggcaatctaaaaattgtcacacgcaaataggtattggaattttatttagcacactattgac 446  Q
     ||||||||||||||||||||||| |||||||||||||| |||||||| ||| ||||||||||  ||||||||||||    
T  26439366 taaaaagaaaaatttgggcaatctgaaaattgtcacacgtaaataggtcttgaaattttatttgacacactattgac 26439290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 273 - 456
Target Start/End: Complemental strand, 17511417 - 17511233
Alignment:
Q  273 gggcggttctaccgtatggcgaccccgggcggtcgcccgggctcaatcgataatttttgcacattagactcaatccaaaagtccattaacacatttacaa 372  Q
    ||||||||||||||||||||||||| || ||||||||| | ||| |||||||||||||||||||||||||||| ||||||| ||||||||||||||||||    
T  17511417 gggcggttctaccgtatggcgaccctgg-cggtcgcccagactcgatcgataatttttgcacattagactcaacccaaaagcccattaacacatttacaa 17511319  T
Q  373 aaagaaaaatttgggcaatctaaaaattgtcacacgcaaataggtattgg-aattttatttagcacactattga-cggttcatctc 456  Q
    ||||||||||||||||||| | |||||||| |||||||||||||| |||| |||||||||||||||| |||||| |||||||||||    
T  17511318 aaagaaaaatttgggcaatttgaaaattgttacacgcaaataggtcttggaaattttatttagcacattattgatcggttcatctc 17511233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 270 - 446
Target Start/End: Original strand, 13012168 - 13012344
Alignment:
Q  270 catgggcggttctaccgtatggcgaccccgggcggtcgcccgggctcaatcgataatttttgcacattagactcaatccaaaagtccattaacacattta 369  Q
    |||||||||||| ||||| | |||||||||||||||||||||||||| ||||||||||||||||||||||| |||| | |||||  ||||||||||||||    
T  13012168 catgggcggttccaccgtgtagcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagattcaaccaaaaagctcattaacacattta 13012267  T
Q  370 caaaaagaaaaatttgggcaatctaaaaattgtcacacgcaaataggtattggaattttatttagcacactattgac 446  Q
     ||||||||||||||||||||| | |||||||||||||| |||||||| |||||||||||||| |||||||||||||    
T  13012268 taaaaagaaaaatttgggcaatttgaaaattgtcacacgtaaataggtcttggaattttatttggcacactattgac 13012344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 270 - 446
Target Start/End: Original strand, 47500753 - 47500929
Alignment:
Q  270 catgggcggttctaccgtatggcgaccccgggcggtcgcccgggctcaatcgataatttttgcacattagactcaatccaaaagtccattaacacattta 369  Q
    |||||||||||| ||||| | |||||||||||||||||||||||||| |||||||||||||||||||||||||||| | |||||  ||||||||||||||    
T  47500753 catgggcggttccaccgtgtagcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagactcaaccaaaaagctcattaacacattta 47500852  T
Q  370 caaaaagaaaaatttgggcaatctaaaaattgtcacacgcaaataggtattggaattttatttagcacactattgac 446  Q
      |||||||||||||||||||| | |||||||||||||| |||||||| |||||||||||||| |||||||||||||    
T  47500853 tgaaaagaaaaatttgggcaatttgaaaattgtcacacgtaaataggtcttggaattttatttggcacactattgac 47500929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 270 - 445
Target Start/End: Complemental strand, 43143771 - 43143596
Alignment:
Q  270 catgggcggttctaccgtatggcgaccccgggcggtcgcccgggctcaatcgataatttttgcacattagactcaatccaaaagtccattaacacattta 369  Q
    |||||||||||  |||||  | ||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| | ||||||||| |||    
T  43143771 catgggcggtttcaccgtccgacgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagactcaacccaaaagccaattaacacactta 43143672  T
Q  370 caaaaagaaaaatttgggcaatctaaaaattgtcacacgcaaataggtattggaattttatttagcacactattga 445  Q
    |||||||||||||||||||||||| |||||| |||||||||||||||| | ||||||||||||||||||| |||||    
T  43143671 caaaaagaaaaatttgggcaatctgaaaattctcacacgcaaataggtctcggaattttatttagcacacaattga 43143596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 269 - 446
Target Start/End: Original strand, 43355883 - 43356060
Alignment:
Q  269 gcatgggcggttctaccgtatggcgaccccgggcggtcgcccgggctcaatcgataatttttgcacattagactcaatccaaaagtccattaacacattt 368  Q
    ||||||||||||| ||||| | |||||||| ||| |||||||||||||  ||||||||||||||||||||||||||| ||||||| ||||||||||||||    
T  43355883 gcatgggcggttccaccgtgtagcgaccccaggcagtcgcccgggctcggtcgataatttttgcacattagactcaacccaaaagcccattaacacattt 43355982  T
Q  369 acaaaaagaaaaatttgggcaatctaaaaattgtcacacgcaaataggtattggaattttatttagcacactattgac 446  Q
    | ||||||||||||||||||||||| |||||||||||||| |||||||| ||| ||||||||||  ||||||||||||    
T  43355983 ataaaaagaaaaatttgggcaatctgaaaattgtcacacgtaaataggtcttgaaattttatttgacacactattgac 43356060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 293 - 456
Target Start/End: Complemental strand, 3293060 - 3292896
Alignment:
Q  293 gaccccgggcggtcgcccgggctcaatcgataatttttgcacattagactcaatccaaaagtccattaacacatttacaaaaagaaaaatttgggcaatc 392  Q
    |||||||||||||||||||||||| ||||||||||||||| |||||||| ||| ||||||| | ||||||||| ||||||||||||||||||||||||||    
T  3293060 gaccccgggcggtcgcccgggctcgatcgataatttttgcccattagacccaacccaaaagccaattaacacacttacaaaaagaaaaatttgggcaatc 3292961  T
Q  393 taaaaattgtcacacgcaaataggtattggaattttatttagcacactattgacg-gttcatctc 456  Q
    | |||||| |||||||||||||||| | ||||||||||||||||||||||||||| |||||||||    
T  3292960 tgaaaattctcacacgcaaataggtctcggaattttatttagcacactattgacgagttcatctc 3292896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 273 - 439
Target Start/End: Complemental strand, 10353068 - 10352902
Alignment:
Q  273 gggcggttctaccgtatggcgaccccgggcggtcgcccgggctcaatcgataatttttgcacattagactcaatccaaaagtccattaacacatttacaa 372  Q
    ||||||||  |||||  ||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| | ||||||||||||||||||||||||    
T  10353068 gggcggtttcaccgtccggcgacccctggcggtcgcccgggctcaatcgataatttttgcacattagacccaaccaaaaagtccattaacacatttacaa 10352969  T
Q  373 aaagaaaaatttgggcaatctaaaaattgtcacacgcaaataggtattggaattttatttagcacac 439  Q
    || |||||||||||||||||| |||||| | |||||||||||||| | |||||||||||||||||||    
T  10352968 aaggaaaaatttgggcaatctgaaaattcttacacgcaaataggtctcggaattttatttagcacac 10352902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 291 - 445
Target Start/End: Complemental strand, 42333942 - 42333788
Alignment:
Q  291 gcgaccccgggcggtcgcccgggctcaatcgataatttttgcacattagactcaatccaaaagtccattaacacatttacaaaaagaaaaatttgggcaa 390  Q
    |||| |||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||| | ||||||||| ||||||||||||||||||||||||    
T  42333942 gcgatcccgggcggtcgtccgggctcaatcgataatttttgcacattagactcaacccaaaagccaattaacacacttacaaaaagaaaaatttgggcaa 42333843  T
Q  391 tctaaaaattgtcacacgcaaataggtattggaattttatttagcacactattga 445  Q
    ||| |||||| |||||||||||||||| | ||||||||||||||||||| |||||    
T  42333842 tctgaaaattctcacacgcaaataggtctcggaattttatttagcacacaattga 42333788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 290 - 456
Target Start/End: Complemental strand, 30216909 - 30216742
Alignment:
Q  290 ggcgaccccgggcggtcgcccgggctcaatcgataatttttgcacattagactcaatccaaaagtccattaacacatttacaaaaagaaaaatttgggca 389  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| |||||||   ||||||||| |||||||||||||||||||||||    
T  30216909 ggcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagacccaacccaaaagctaattaacacacttacaaaaagaaaaatttgggca 30216810  T
Q  390 atctaaaaattgtcacacgcaaataggtattggaattttatttagcacactattgac-ggttcatctc 456  Q
    |||| |||||| ||||| |||||||| | | |||||||||||||||||||||||||| ||||||||||    
T  30216809 atctgaaaattctcacatgcaaatagatctcggaattttatttagcacactattgacgggttcatctc 30216742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 290 - 448
Target Start/End: Complemental strand, 6690402 - 6690244
Alignment:
Q  290 ggcgaccccgggcggtcgcccgggctcaatcgataatttttgcacattagactcaatccaaaagtccattaacacatttacaaaaagaaaaatttgggca 389  Q
    ||||||||||||||||||||||||||| ||||||||||||||| |||||||| ||| ||||||| | ||||||||| |||||||||||||||||||||||    
T  6690402 ggcgaccccgggcggtcgcccgggctcgatcgataatttttgcgcattagacccaacccaaaagccaattaacacacttacaaaaagaaaaatttgggca 6690303  T
Q  390 atctaaaaattgtcacacgcaaataggtattggaattttatttagcacactattgacgg 448  Q
    | || |||||| |||||||||||||||| | | ||||||||||||||||||||||||||    
T  6690302 aactgaaaattctcacacgcaaataggtctcgaaattttatttagcacactattgacgg 6690244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 273 - 448
Target Start/End: Original strand, 40528996 - 40529173
Alignment:
Q  273 gggcggttctaccgtatggcgaccccgggcg--gtcgcccgggctcaatcgataatttttgcacattagactcaatccaaaagtccattaacacatttac 370  Q
    ||||||||||||||||||||||||| |||||  |||| |||| ||| ||||||||||||||||||||| |||||| | ||||   |||||||||||||||    
T  40528996 gggcggttctaccgtatggcgaccctgggcgaggtcgtccggactcgatcgataatttttgcacattaaactcaacctaaaaactcattaacacatttac 40529095  T
Q  371 aaaaagaaaaatttgggcaatctaaaaattgtcacacgcaaataggtattggaattttatttagcacactattgacgg 448  Q
    |||||||||||||||| |||| | |||||||||||| |||||||||| ||||||||||||||||||||||||||||||    
T  40529096 aaaaagaaaaatttggacaatttgaaaattgtcacatgcaaataggtcttggaattttatttagcacactattgacgg 40529173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 273 - 448
Target Start/End: Complemental strand, 50205261 - 50205086
Alignment:
Q  273 gggcggttctaccgtatggcgaccccgggcggtcgcccgggctcaatcgataatttttgcacattagactcaatccaaaagtccattaacacatttacaa 372  Q
    ||||||||  |||||  ||||| |||||||||||||||| |||| |||||||||||||||||||||||  ||| ||||||| | ||||||||| ||||||    
T  50205261 gggcggtttcaccgtccggcgatcccgggcggtcgcccgagctcgatcgataatttttgcacattagatccaacccaaaagccaattaacacacttacaa 50205162  T
Q  373 aaagaaaaatttgggcaatctaaaaattgtcacacgcaaataggtattggaattttatttagcacactattgacgg 448  Q
    ||||||||| |||| |||||| |||||| |||||||||||||||| ||||||||||||||||||||||||||||||    
T  50205161 aaagaaaaaattggacaatctgaaaattctcacacgcaaataggtcttggaattttatttagcacactattgacgg 50205086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 273 - 456
Target Start/End: Original strand, 6235515 - 6235687
Alignment:
Q  273 gggcggttctaccgtatggcgaccccgggcggtcgcccgggctcaatcgataatttttgcacattagactcaatccaaaagtccattaacacatttacaa 372  Q
    ||||||||||||||||||||||  | |||||||||| ||||||| | |||||||||||||||            ||||||||||||||||||||||||||    
T  6235515 gggcggttctaccgtatggcgattctgggcggtcgctcgggctcgaccgataatttttgcac------------ccaaaagtccattaacacatttacaa 6235602  T
Q  373 aaagaaaaatttgggcaatctaaaaattgtcacacgcaaataggtattggaattttatttagcacactattgac-ggttcatctc 456  Q
    ||||||||||||||||||| | ||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||    
T  6235603 aaagaaaaatttgggcaatttgaaaattgtcacacgcaaataggtcttggaattttatttagcacactattgacgggttcatctc 6235687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 292 - 456
Target Start/End: Original strand, 48989330 - 48989495
Alignment:
Q  292 cgaccccgggcggtcgcccgggctcaatcgataatttttgcacattagactcaatccaaaagtccattaacacatttacaaaaagaaaaatttgggcaat 391  Q
    |||| ||||||||||  ||||| || ||||||||||||||||||||| || |||  |||||||||||||||||| |||||||||||||||||||||||||    
T  48989330 cgactccgggcggtcaaccgggttcgatcgataatttttgcacattaaacccaactcaaaagtccattaacacacttacaaaaagaaaaatttgggcaat 48989429  T
Q  392 ctaaaaattgtcacacgcaaataggtattggaattttatttagcacactattgac-ggttcatctc 456  Q
    || |||||| ||| |||||||||||| | |||||||||||||||||||||||||| ||||||||||    
T  48989430 ctgaaaattctcatacgcaaataggtctcggaattttatttagcacactattgacgggttcatctc 48989495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 291 - 441
Target Start/End: Complemental strand, 30077797 - 30077647
Alignment:
Q  291 gcgaccccgggcggtcgcccgggctcaatcgataatttttgcacattagactcaatccaaaagtccattaacacatttacaaaaagaaaaatttgggcaa 390  Q
    |||||| ||||||||||||| |||||||||||||| ||||||||||||||| ||| | |||||| ||||||||||||||||||||||||||||||| |||    
T  30077797 gcgacctcgggcggtcgcccaggctcaatcgataaattttgcacattagacccaaccaaaaagttcattaacacatttacaaaaagaaaaatttggacaa 30077698  T
Q  391 tctaaaaattgtcacacgcaaataggtattggaattttatttagcacacta 441  Q
    ||| |||||| | |||| ||||||||| ||| |||||||||||||||||||    
T  30077697 tctgaaaatttttacacacaaataggtcttgaaattttatttagcacacta 30077647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 307 - 456
Target Start/End: Original strand, 44156668 - 44156818
Alignment:
Q  307 gcccgggctcaatcgataatttttgcacattagactcaatccaaaagtccattaacacatttacaaaaagaaaaatttgggcaatctaaaaattgtcaca 406  Q
    |||||||||||| |||||||||||||||||||||| ||| ||||||| | ||||||||| |||||||||||||| ||||| |||||| |||||| || ||    
T  44156668 gcccgggctcaaccgataatttttgcacattagacccaacccaaaagccaattaacacacttacaaaaagaaaattttggacaatctgaaaattctctca 44156767  T
Q  407 cgcaaataggtattggaattttatttagcacactattgac-ggttcatctc 456  Q
    ||||||||||| | |||||||||||||||||||||||||| ||||||||||    
T  44156768 cgcaaataggtctcggaattttatttagcacactattgacgggttcatctc 44156818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 296 - 456
Target Start/End: Complemental strand, 29996144 - 29995983
Alignment:
Q  296 cccgggcggtcgcccgggctcaatcgataatttttgcacattagactcaatccaaaagtccattaacacatttacaaaaagaaaaatttgggcaatctaa 395  Q
    ||||| |||||| |||| ||| |||||||||||||| ||||||||||||| | |||||||||||||||||||||| |||||||||||||||||||||| |    
T  29996144 cccggacggtcgtccggactcgatcgataatttttgtacattagactcaaccaaaaagtccattaacacatttacgaaaagaaaaatttgggcaatctga 29996045  T
Q  396 aaattgtcacacgcaaataggtattggaattttatttagcacactattgacgg-ttcatctc 456  Q
    ||||| |  ||||||||||| | | ||||||||||| |||||||||||||||| ||||||||    
T  29996044 aaattcttgcacgcaaatagttctcggaattttattaagcacactattgacggattcatctc 29995983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 325 - 456
Target Start/End: Original strand, 1817752 - 1817884
Alignment:
Q  325 atttttgcacattagactcaatccaaaagtccattaacacatttacaaaaagaaaaatttgggcaatctaaaaattgtcacacgcaaataggtattggaa 424  Q
    ||||||||||||||||  ||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||| | |||||||||||||| | ||||    
T  1817752 atttttgcacattagatccaatccaaaagtccattaatacatttataaaaagaaaaatttgggcaatctaaaaattcttacacgcaaataggtctcggaa 1817851  T
Q  425 ttttatttagcacactattgacgg-ttcatctc 456  Q
    ||||||||| |||||||||| ||| ||||||||    
T  1817852 ttttatttaacacactattgtcggattcatctc 1817884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 293 - 445
Target Start/End: Complemental strand, 28877414 - 28877262
Alignment:
Q  293 gaccccgggcggtcgcccgggctcaatcgataatttttgcacattagactcaatccaaaagtccattaacacatttacaaaaagaaaaatttgggcaatc 392  Q
    ||||||| ||||||||  |||||  ||||||||||||||||||||||| |||| | |||||   ||||||||  ||| ||||||||||||||||| ||||    
T  28877414 gaccccgtgcggtcgcttgggctagatcgataatttttgcacattagattcaacctaaaagctaattaacacgcttataaaaagaaaaatttgggaaatc 28877315  T
Q  393 taaaaattgtcacacgcaaataggtattggaattttatttagcacactattga 445  Q
    |||||||| |||||||||||||||| | |||||||||||||||||||||||||    
T  28877314 taaaaattctcacacgcaaataggtctcggaattttatttagcacactattga 28877262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 290 - 444
Target Start/End: Original strand, 26448053 - 26448206
Alignment:
Q  290 ggcgaccccgggcggtcgcccgggctcaatcgataatttttgcacattagactcaatccaaaagtccattaacacatttacaaaaagaaaaatttgggca 389  Q
    |||||| ||| ||| ||| |||| ||| ||||||||||||||||||||| |   || ||||||||||||||||||| ||||||||| |||||||||||||    
T  26448053 ggcgactccgtgcgatcgtccggactcgatcgataatttttgcacattaaatctaacccaaaagtccattaacacacttacaaaaa-aaaaatttgggca 26448151  T
Q  390 atctaaaaattgtcacacgcaaataggtattggaattttatttagcacactattg 444  Q
    |||| |||||| ||| || ||||||||| | ||||||||||||||||||||||||    
T  26448152 atctgaaaattctcatacacaaataggtttcggaattttatttagcacactattg 26448206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 318 - 445
Target Start/End: Original strand, 35545981 - 35546108
Alignment:
Q  318 atcgataatttttgcacattagactcaatccaaaagtccattaacacatttacaaaaagaaaaatttgggcaatctaaaaattgtcacacgcaaataggt 417  Q
    ||||| ||||||||| ||| |||| ||| ||||||| | ||||||||| |||||||||||||| |||||||||||| |||||| |||||||||||| |||    
T  35545981 atcgacaatttttgcgcatcagacccaacccaaaagccaattaacacacttacaaaaagaaaattttgggcaatctgaaaattctcacacgcaaatgggt 35546080  T
Q  418 attggaattttatttagcacactattga 445  Q
     |  ||||||||||||||||||||||||    
T  35546081 ctctgaattttatttagcacactattga 35546108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 292 - 416
Target Start/End: Original strand, 30109958 - 30110084
Alignment:
Q  292 cgaccccgggcggtcgcccgggctcaatcgataatttttgcacattagactcaatccaaaagtccattaacacatttacaaaaagaaaaatttgggc--a 389  Q
    ||||||||| ||||||||||| ||| |||||||||||||||||||||||| ||| || |||| ||||||||||| |||||||||||||||||||| |  |    
T  30109958 cgaccccggacggtcgcccggactcgatcgataatttttgcacattagacccaaacccaaagaccattaacacacttacaaaaagaaaaatttggacaaa 30110057  T
Q  390 atctaaaaattgtcacacgcaaatagg 416  Q
    || | |||| | |||||||||||||||    
T  30110058 atatgaaaaatctcacacgcaaatagg 30110084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 368 - 445
Target Start/End: Complemental strand, 13392970 - 13392893
Alignment:
Q  368 tacaaaaagaaaaatttgggcaatctaaaaattgtcacacgcaaataggtattggaattttatttagcacactattga 445  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||| | | |||||||||||||||||||||||    
T  13392970 tacaaaaagaaaaatttgggcaatctaaaaattctcacacgcaaataggtctcgaaattttatttagcacactattga 13392893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 368 - 445
Target Start/End: Complemental strand, 13396109 - 13396032
Alignment:
Q  368 tacaaaaagaaaaatttgggcaatctaaaaattgtcacacgcaaataggtattggaattttatttagcacactattga 445  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||| | | |||||||||||||||||||||||    
T  13396109 tacaaaaagaaaaatttgggcaatctaaaaattctcacacgcaaataggtctcgaaattttatttagcacactattga 13396032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 273 - 375
Target Start/End: Original strand, 27363344 - 27363446
Alignment:
Q  273 gggcggttctaccgtatggcgaccccgggcggtcgcccgggctcaatcgataatttttgcacattagactcaatccaaaagtccattaacacatttacaa 372  Q
    |||||||| ||||||||||||||| ||||||||||||||||||| |||||   |||||||| ||||| | ||| ||||||| ||||||||||| ||||||    
T  27363344 gggcggttttaccgtatggcgacctcgggcggtcgcccgggctcgatcgaatttttttgcatattaggcccaacccaaaagcccattaacacacttacaa 27363443  T
Q  373 aaa 375  Q
    |||    
T  27363444 aaa 27363446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 302 - 387
Target Start/End: Original strand, 48129978 - 48130063
Alignment:
Q  302 cggtcgcccgggctcaatcgataatttttgcacattagactcaatccaaaagtccattaacacatttacaaaaagaaaaatttggg 387  Q
    |||||| |||||||| |||||||||||||||| ||||||| ||| |||||||  |||||||||| |||||||||||||||||||||    
T  48129978 cggtcgaccgggctcgatcgataatttttgcatattagacccaacccaaaagctcattaacacacttacaaaaagaaaaatttggg 48130063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 292 - 390
Target Start/End: Original strand, 45194178 - 45194276
Alignment:
Q  292 cgaccccgggcggtcgcccgggctcaatcgataatttttgcacattagactcaatccaaaagtccattaacacatttacaaaaagaaaaatttgggcaa 390  Q
    ||||||| |||| | |||||| ||| ||| ||||||||||||||||| |||||| ||||||||||||||||||| ||||||||| ||||  ||||||||    
T  45194178 cgaccccaggcgattgcccggactcgatcaataatttttgcacattaaactcaacccaaaagtccattaacacacttacaaaaaaaaaatattgggcaa 45194276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 270 - 331
Target Start/End: Original strand, 7769308 - 7769369
Alignment:
Q  270 catgggcggttctaccgtatggcgaccccgggcggtcgcccgggctcaatcgataatttttg 331  Q
    |||||||||||  |||||  ||||||||| ||||||||||||||||| ||||||||||||||    
T  7769308 catgggcggtttcaccgtccggcgaccccaggcggtcgcccgggctcgatcgataatttttg 7769369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 318 - 383
Target Start/End: Original strand, 6254572 - 6254637
Alignment:
Q  318 atcgataatttttgcacattagactcaatccaaaagtccattaacacatttacaaaaagaaaaatt 383  Q
    ||||||||||||||||||||| || ||| ||||||| | ||||||||| || |||||| |||||||    
T  6254572 atcgataatttttgcacattaaacccaacccaaaagacaattaacacacttgcaaaaaaaaaaatt 6254637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 290 - 327
Target Start/End: Complemental strand, 49908819 - 49908782
Alignment:
Q  290 ggcgaccccgggcggtcgcccgggctcaatcgataatt 327  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  49908819 ggcgaccccgggcggtcgcccgggctcgatcgataatt 49908782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 291 - 338
Target Start/End: Complemental strand, 13393036 - 13392989
Alignment:
Q  291 gcgaccccgggcggtcgcccgggctcaatcgataatttttgcacatta 338  Q
    |||||||||| |||||||||||||||||||||| | ||||||| ||||    
T  13393036 gcgaccccggacggtcgcccgggctcaatcgatgacttttgcatatta 13392989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 291 - 338
Target Start/End: Complemental strand, 13396175 - 13396128
Alignment:
Q  291 gcgaccccgggcggtcgcccgggctcaatcgataatttttgcacatta 338  Q
    |||||||||| |||||||||||||||||||||| | ||||||| ||||    
T  13396175 gcgaccccggacggtcgcccgggctcaatcgatgacttttgcatatta 13396128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 290 - 327
Target Start/End: Complemental strand, 5517531 - 5517494
Alignment:
Q  290 ggcgaccccgggcggtcgcccgggctcaatcgataatt 327  Q
    |||||||||||||||||||| |||||| ||||||||||    
T  5517531 ggcgaccccgggcggtcgcctgggctcgatcgataatt 5517494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 274 - 375
Target Start/End: Original strand, 20113775 - 20113876
Alignment:
Q  274 ggcggttctaccgtatggcgaccccgggcggtcgcccgggctcaatcgataatttttgcacattagactcaatccaaaagtccattaacacatttacaaa 373  Q
    |||||||| ||||  |||||||||||| |  |||||||  ||||||||||||||| |  |||||||  |||| ||||||| | ||||||||| ||| |||    
T  20113775 ggcggttccaccgcctggcgaccccggacactcgcccgaactcaatcgataatttctttacattaggttcaacccaaaagccgattaacacacttaaaaa 20113874  T
Q  374 aa 375  Q
    ||    
T  20113875 aa 20113876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 290 - 327
Target Start/End: Complemental strand, 50720513 - 50720476
Alignment:
Q  290 ggcgaccccgggcggtcgcccgggctcaatcgataatt 327  Q
    ||||||| ||||||||||||||||||||||| ||||||    
T  50720513 ggcgacctcgggcggtcgcccgggctcaatcaataatt 50720476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 143; Significance: 6e-75; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 266 - 448
Target Start/End: Complemental strand, 34948949 - 34948767
Alignment:
Q  266 gaggcatgggcggttctaccgtatggcgaccccgggcggtcgcccgggctcaatcgataatttttgcacattagactcaatccaaaagtccattaacaca 365  Q
    ||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||||||||||||||||||||||||||| ||||||| |||||||||||    
T  34948949 gaggcatgggcggttctaccgtatggcgaccccaggcggtcgcccaggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacaca 34948850  T
Q  366 tttacaaaaagaaaaatttgggcaatctaaaaattgtcacacgcaaataggtattggaattttatttagcacactattgacgg 448  Q
    |||||||||||||||||||||||||||| ||||||||||||| ||||||| | ||| ||||||||||||||||||||||||||    
T  34948849 tttacaaaaagaaaaatttgggcaatctgaaaattgtcacacacaaatagatcttgaaattttatttagcacactattgacgg 34948767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 270 - 448
Target Start/End: Original strand, 13837801 - 13837979
Alignment:
Q  270 catgggcggttctaccgtatggcgaccccgggcggtcgcccgggctcaatcgataatttttgcacattagactcaatccaaaagtccattaacacattta 369  Q
    |||||||||||||||||||||||||||||||||| |||| |||| || |||||||||||||| ||||||||||||| |||||||  ||| ||||||||||    
T  13837801 catgggcggttctaccgtatggcgaccccgggcgatcgctcgggttcgatcgataatttttgtacattagactcaacccaaaagcacatcaacacattta 13837900  T
Q  370 caaaaagaaaaatttgggcaatctaaaaattgtcacacgcaaataggtattggaattttatttagcacactattgacgg 448  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  13837901 caaaaagaaaaatttgggcaatctgaaaattgtcacacgcaaataggtcttggaattttatttagcacactattgacgg 13837979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 270 - 446
Target Start/End: Original strand, 398597 - 398773
Alignment:
Q  270 catgggcggttctaccgtatggcgaccccgggcggtcgcccgggctcaatcgataatttttgcacattagactcaatccaaaagtccattaacacattta 369  Q
    |||||||||||| ||||| | |||||||||||||||||||||||||| |||||||||||||||||||||||||||| | |||||  ||||||||||||||    
T  398597 catgggcggttccaccgtgtagcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagactcaaccaaaaagctcattaacacattta 398696  T
Q  370 caaaaagaaaaatttgggcaatctaaaaattgtcacacgcaaataggtattggaattttatttagcacactattgac 446  Q
     ||||||||||||||||||||| | |||||||||||||| |||||||| |||||||||||||| |||||||||||||    
T  398697 taaaaagaaaaatttgggcaatttgaaaattgtcacacgtaaataggtcttggaattttatttggcacactattgac 398773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 290 - 456
Target Start/End: Original strand, 28996730 - 28996897
Alignment:
Q  290 ggcgaccccgggcggtcgcccgggctcaatcgataatttttgcacattagactcaatccaaaagtccattaacacatttacaaaaagaaaaatttgggca 389  Q
    |||||||||||||||||||||| |||| ||||||||||||||| |||||||| ||| | ||||||| ||||||||| |||||||||||||||||||||||    
T  28996730 ggcgaccccgggcggtcgcccgagctcgatcgataatttttgcgcattagacccaacctaaaagtcaattaacacacttacaaaaagaaaaatttgggca 28996829  T
Q  390 atctaaaaattgtcacacgcaaataggtattggaattttatttagcacactattgac-ggttcatctc 456  Q
    |||| |||||| |||||||||||||||| | |||||||||||||||||||||||||| ||||||||||    
T  28996830 atctgaaaattctcacacgcaaataggtctcggaattttatttagcacactattgacgggttcatctc 28996897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 290 - 456
Target Start/End: Original strand, 18339106 - 18339273
Alignment:
Q  290 ggcgaccccgggcggtcgcccgggctcaatcgataatttttgcacattagactcaatccaaaagtccattaacacatttacaaaaagaaaaatttgggca 389  Q
    ||||||||||||||||||||||||||| ||| |||||||||||||||||||| ||||| ||||| | ||||||||| |||||||||||||| ||||||||    
T  18339106 ggcgaccccgggcggtcgcccgggctcgatcaataatttttgcacattagacccaatctaaaagccaattaacacacttacaaaaagaaaattttgggca 18339205  T
Q  390 atctaaaaattgtcacacgcaaataggtattggaattttatttagcacactattgac-ggttcatctc 456  Q
    |||| |||||| ||||| |||||||||| | |||||||||||||||||||||||||| ||||||||||    
T  18339206 atctgaaaattctcacatgcaaataggtctcggaattttatttagcacactattgacgggttcatctc 18339273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 296 - 441
Target Start/End: Original strand, 29743289 - 29743434
Alignment:
Q  296 cccgggcggtcgcccgggctcaatcgataatttttgcacattagactcaatccaaaagtccattaacacatttacaaaaagaaaaatttgggcaatctaa 395  Q
    |||||||||| ||||||||||||||||||||||||||||||||||| ||| | |||||| |||||||||||||||| ||||||||||||||||||||| |    
T  29743289 cccgggcggttgcccgggctcaatcgataatttttgcacattagacccaaccaaaaagttcattaacacatttacagaaagaaaaatttgggcaatctga 29743388  T
Q  396 aaattgtcacacgcaaataggtattggaattttatttagcacacta 441  Q
    ||||| | |||||||||||||| | |||||||||||||||||||||    
T  29743389 aaattcttacacgcaaataggtctcggaattttatttagcacacta 29743434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 306 - 456
Target Start/End: Complemental strand, 33229487 - 33229336
Alignment:
Q  306 cgcccgggctcaatcgataatttttgcacattagactcaatccaaaagtccattaacacatttacaaaaagaaaaatttgggcaatctaaaaattgtcac 405  Q
    ||||||||||| |||||| ||||||| ||||||||| ||| |||||||||||||||||||||| |||||||||||||||||||||||| |||||| | ||    
T  33229487 cgcccgggctcgatcgatcatttttgtacattagacccaacccaaaagtccattaacacatttccaaaaagaaaaatttgggcaatctgaaaattcttac 33229388  T
Q  406 acgcaaataggtattggaattttatttagcacactattgacgg-ttcatctc 456  Q
    ||| ||||| || | || ||||||||||||||||||||| ||| ||||||||    
T  33229387 acgtaaataagtctcgggattttatttagcacactattgccggattcatctc 33229336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 290 - 375
Target Start/End: Complemental strand, 24697984 - 24697899
Alignment:
Q  290 ggcgaccccgggcggtcgcccgggctcaatcgataatttttgcacattagactcaatccaaaagtccattaacacatttacaaaaa 375  Q
    ||||||||||| |  |||||||||||||||||||||||||| |||||||| | ||| ||||||| ||||||||||| |||||||||    
T  24697984 ggcgaccccggacactcgcccgggctcaatcgataattttttcacattaggcccaacccaaaagcccattaacacacttacaaaaa 24697899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 290 - 386
Target Start/End: Complemental strand, 31028531 - 31028435
Alignment:
Q  290 ggcgaccccgggcggtcgcccgggctcaatcgataatttttgcacattagactcaatccaaaagtccattaacacatttacaaaaagaaaaatttgg 386  Q
    |||||||||| ||||| |||||| ||| |||||||||||||||||||||||  ||| | |||||  ||||||||||||||||||||| ||| |||||    
T  31028531 ggcgaccccgagcggttgcccggactcgatcgataatttttgcacattagatccaacctaaaagctcattaacacatttacaaaaaggaaattttgg 31028435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 305 - 375
Target Start/End: Original strand, 24695502 - 24695572
Alignment:
Q  305 tcgcccgggctcaatcgataatttttgcacattagactcaatccaaaagtccattaacacatttacaaaaa 375  Q
    |||||| |||| ||||||| ||||||  ||||||| ||||| ||||||| ||||||||||| |||||||||    
T  24695502 tcgcccaggctaaatcgatcattttttaacattaggctcaacccaaaagcccattaacacacttacaaaaa 24695572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 290 - 326
Target Start/End: Original strand, 13647017 - 13647053
Alignment:
Q  290 ggcgaccccgggcggtcgcccgggctcaatcgataat 326  Q
    ||||||||||||||||||||||||||| |||||||||    
T  13647017 ggcgaccccgggcggtcgcccgggctcgatcgataat 13647053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 305 - 337
Target Start/End: Original strand, 3050094 - 3050126
Alignment:
Q  305 tcgcccgggctcaatcgataatttttgcacatt 337  Q
    |||||||||||||||| ||||||||||||||||    
T  3050094 tcgcccgggctcaatcaataatttttgcacatt 3050126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 139; Significance: 1e-72; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 270 - 448
Target Start/End: Original strand, 7433425 - 7433603
Alignment:
Q  270 catgggcggttctaccgtatggcgaccccgggcggtcgcccgggctcaatcgataatttttgcacattagactcaatccaaaagtccattaacacattta 369  Q
    ||||||||||||||||||||||| |||||||||||||||||| |||| ||| |||||||||||||||||||||||| ||||||| |||||||||||||||    
T  7433425 catgggcggttctaccgtatggcaaccccgggcggtcgcccgagctcgatctataatttttgcacattagactcaacccaaaagcccattaacacattta 7433524  T
Q  370 caaaaagaaaaatttgggcaatctaaaaattgtcacacgcaaataggtattggaattttatttagcacactattgacgg 448  Q
    ||||||||||| |||||||||||||||||||||||||| ||||||||| ||| ||||||||||||||||||||||||||    
T  7433525 caaaaagaaaattttgggcaatctaaaaattgtcacacacaaataggtcttgaaattttatttagcacactattgacgg 7433603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 273 - 456
Target Start/End: Complemental strand, 42311125 - 42310941
Alignment:
Q  273 gggcggttctaccgtatggcgaccccgggcggtcgcccgggctcaatcgataatttttgcacattagactcaatccaaaagtccattaacacatttacaa 372  Q
    |||||||||||||||||||||||||| | || |||||||||||| |||||||||||||||||||||||||||| ||||||| || |||||||||||||||    
T  42311125 gggcggttctaccgtatggcgaccccagacgatcgcccgggctcgatcgataatttttgcacattagactcaacccaaaagcccgttaacacatttacaa 42311026  T
Q  373 aaagaaaaatttgggcaatctaaaaattgtcacacgcaaataggtattggaattttatttagcacactattgac-ggttcatctc 456  Q
    ||||||||||||||||||||| |||||||||||||||||||| || ||| |||||||||||| || |||||||| ||||||||||    
T  42311025 aaagaaaaatttgggcaatctgaaaattgtcacacgcaaataagtcttgaaattttatttagtacgctattgacgggttcatctc 42310941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 269 - 446
Target Start/End: Original strand, 26144234 - 26144411
Alignment:
Q  269 gcatgggcggttctaccgtatggcgaccccgggcggtcgcccgggctcaatcgataatttttgcacattagactcaatccaaaagtccattaacacattt 368  Q
    ||||||||||||| ||||| | |||||||||||||||||||||||||| |||||||||||||||||||||||||||| | |||||  |||||||||||||    
T  26144234 gcatgggcggttccaccgtgtagcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagactcaaccaaaaagctcattaacacattt 26144333  T
Q  369 acaaaaagaaaaatttgggcaatctaaaaattgtcacacgcaaataggtattggaattttatttagcacactattgac 446  Q
    | ||||||||||||||||||||| | |||||||||||||| |||||||| |||||||||||||| |||||||||||||    
T  26144334 ataaaaagaaaaatttgggcaatttgaaaattgtcacacgtaaataggtcttggaattttatttggcacactattgac 26144411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 277 - 446
Target Start/End: Complemental strand, 32982236 - 32982067
Alignment:
Q  277 ggttctaccgtatggcgaccccgggcggtcgcccgggctcaatcgataatttttgcacattagactcaatccaaaagtccattaacacatttacaaaaag 376  Q
    |||||||||||||||||||||||||||||||| ||||| | |||||||||||||||||||||||| ||| | ||||| ||||||||| ||||||||||||    
T  32982236 ggttctaccgtatggcgaccccgggcggtcgcgcgggcccgatcgataatttttgcacattagacccaacctaaaagcccattaacatatttacaaaaag 32982137  T
Q  377 aaaaatttgggcaatctaaaaattgtcacacgcaaataggtattggaattttatttagcacactattgac 446  Q
    |||||||||| |||||| ||||||||||||| ||||||||| ||||||||||||||||||| ||||||||    
T  32982136 aaaaatttggacaatctgaaaattgtcacacacaaataggtcttggaattttatttagcactctattgac 32982067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 294 - 456
Target Start/End: Original strand, 3828988 - 3829150
Alignment:
Q  294 accccgggcggtcgcccgggctcaatcgataatttttgcacattagactcaatccaaaagtccattaacacatttacaaaaagaaaaatttgggcaatct 393  Q
    ||||||| ||||||| |||| || ||||||||||||||||||||| || ||| |||||||| |||||||||| |||||||||||||||||||||||||||    
T  3828988 accccggacggtcgctcgggttcgatcgataatttttgcacattaaacccaacccaaaagttcattaacacacttacaaaaagaaaaatttgggcaatct 3829087  T
Q  394 aaaaattgtcacacgcaaataggtattggaattttatttagcacactattgac-ggttcatctc 456  Q
     |||||| ||| ||||||||||||  ||||||||||||||||||||||||||| ||||||||||    
T  3829088 gaaaattttcatacgcaaataggt-ctggaattttatttagcacactattgacgggttcatctc 3829150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 290 - 448
Target Start/End: Original strand, 17445313 - 17445471
Alignment:
Q  290 ggcgaccccgggcggtcgcccgggctcaatcgataatttttgcacattagactcaatccaaaagtccattaacacatttacaaaaagaaaaatttgggca 389  Q
    |||||||||  |||||||||||||||  ||| |||||||||| ||||||||  ||| ||||||||| ||||||||| |||||||||||||||||||||||    
T  17445313 ggcgaccccatgcggtcgcccgggctggatcaataatttttgtacattagatccaacccaaaagtcaattaacacacttacaaaaagaaaaatttgggca 17445412  T
Q  390 atctaaaaattgtcacacgcaaataggtattggaattttatttagcacactattgacgg 448  Q
    |||| |||||| |||||||||||||||| | |||||||||||||||||| |||||||||    
T  17445413 atctgaaaattctcacacgcaaataggtctcggaattttatttagcacattattgacgg 17445471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 268 - 456
Target Start/End: Original strand, 35907530 - 35907719
Alignment:
Q  268 ggcatgggcggttctaccgtatggcgaccccgggcggtcgcccgggctcaatcgataatttttgcacattagactcaatccaaaagtccattaacacatt 367  Q
    |||||||||||||  ||||   ||||||| ||||||||||||||||||  |||||||||||||||||||||||| ||| ||||||| | ||||  ||| |    
T  35907530 ggcatgggcggtttcaccgcccggcgacctcgggcggtcgcccgggcttgatcgataatttttgcacattagacccaacccaaaagccaattagtacact 35907629  T
Q  368 tacaaaaagaaaaatttgggcaatctaaaaattgtcacacgcaaataggtattggaattttatttagcacactattgacg-gttcatctc 456  Q
    ||||||||||||| |||||| ||||| |||||| |||||||||||||||| | |||||||||||||||||| |||||||| |||||||||    
T  35907630 tacaaaaagaaaattttgggtaatctgaaaattctcacacgcaaataggtctcggaattttatttagcacattattgacgagttcatctc 35907719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 298 - 456
Target Start/End: Complemental strand, 321536 - 321377
Alignment:
Q  298 cgggcggtcgcccgggctcaatcgataatttttgcacattagactcaatccaaaagtccattaacacatttacaaaaagaaaaatttgggcaatctaaaa 397  Q
    |||||||||| |||||||| ||||||||||||||  |||||||  ||| ||||||||||||||||||| ||||||||||||||||||||||||||| |||    
T  321536 cgggcggtcgtccgggctcgatcgataatttttgtgcattagatccaacccaaaagtccattaacacagttacaaaaagaaaaatttgggcaatctgaaa 321437  T
Q  398 attgtcacacgcaaataggtattggaattttatttagcacactattgac-ggttcatctc 456  Q
    ||| ||| | |||||||||| | ||||||||||||| |||| ||||||| ||||||||||    
T  321436 attctcatatgcaaataggtctcggaattttatttaacacattattgacgggttcatctc 321377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 270 - 393
Target Start/End: Original strand, 23313218 - 23313342
Alignment:
Q  270 catgggcggttctaccgtatggcgaccccgggcggtcgcccgggctcaatcgataattt-ttgcacattagactcaatccaaaagtccattaacacattt 368  Q
    ||||||||||||||||||||||||| | |||||||| |||||||||| || ||| |||| |||||||||||||||||   |||||| |||||||||||||    
T  23313218 catgggcggttctaccgtatggcgatctcgggcggttgcccgggctcgattgatgatttgttgcacattagactcaacataaaagttcattaacacattt 23313317  T
Q  369 acaaaaagaaaaatttgggcaatct 393  Q
    |||||||||||||||||||||||||    
T  23313318 acaaaaagaaaaatttgggcaatct 23313342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 273 - 416
Target Start/End: Complemental strand, 41972458 - 41972314
Alignment:
Q  273 gggcggttctaccgtatggcgaccccgggcggtcgcccgggctcaatcgataatttttgcacattagactcaatccaaaagtccattaacacatttacaa 372  Q
    ||||||||| |||||   ||||||||||||||||||| || ||| |||||||||||||||||||||||  ||| | ||||| | ||||||||| ||||||    
T  41972458 gggcggttccaccgtccagcgaccccgggcggtcgcctgg-ctcgatcgataatttttgcacattagatccaacctaaaagcctattaacacacttacaa 41972360  T
Q  373 aaagaaaaatttgg--gcaatctaaaaattgtcacacgcaaatagg 416  Q
    ||||||||||||||    ||||| |||||| |||||||||||||||    
T  41972359 aaagaaaaatttggaaaaaatctgaaaattctcacacgcaaatagg 41972314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 290 - 416
Target Start/End: Original strand, 33489687 - 33489815
Alignment:
Q  290 ggcgaccccgggcggtcgcccgggctcaatcgataatttttgcacattagactcaatccaaaagtccattaacacatttacaaaaagaaaaatttgggc- 388  Q
    ||||||||||| ||||||  |||| |   ||||||||||||| ||||||||||||| | ||||| ||||||||||| |||| |||||||||||||| ||     
T  33489687 ggcgaccccggacggtcgttcgggattgttcgataatttttgtacattagactcaaactaaaagcccattaacacacttactaaaagaaaaatttgagca 33489786  T
Q  389 -aatctaaaaattgtcacacgcaaatagg 416  Q
     ||||| |||||| |||||||||||||||    
T  33489787 aaatctgaaaattctcacacgcaaatagg 33489815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 290 - 326
Target Start/End: Complemental strand, 44352650 - 44352614
Alignment:
Q  290 ggcgaccccgggcggtcgcccgggctcaatcgataat 326  Q
    |||||||||||| |||||||||||||| |||||||||    
T  44352650 ggcgaccccgggaggtcgcccgggctcgatcgataat 44352614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 138; Significance: 6e-72; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 269 - 446
Target Start/End: Complemental strand, 22968632 - 22968455
Alignment:
Q  269 gcatgggcggttctaccgtatggcgaccccgggcggtcgcccgggctcaatcgataatttttgcacattagactcaatccaaaagtccattaacacattt 368  Q
    ||||||||||||||||||| | ||||||||||||||||| |||||||| ||||||||||||||||||||||||| || ||||||| ||||||||||||||    
T  22968632 gcatgggcggttctaccgtgtagcgaccccgggcggtcgtccgggctcgatcgataatttttgcacattagacttaacccaaaagcccattaacacattt 22968533  T
Q  369 acaaaaagaaaaatttgggcaatctaaaaattgtcacacgcaaataggtattggaattttatttagcacactattgac 446  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||| ||| ||||||||||||||||||||||||    
T  22968532 acaaaaagaaaaatttgggcaatctaaaaattgtcacacgtaaataggtcttgaaattttatttagcacactattgac 22968455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 270 - 446
Target Start/End: Complemental strand, 6269613 - 6269437
Alignment:
Q  270 catgggcggttctaccgtatggcgaccccgggcggtcgcccgggctcaatcgataatttttgcacattagactcaatccaaaagtccattaacacattta 369  Q
    |||||||||||||||||| | |||| |||||||||||| |||| ||| |||||||||||||||||||||||||||| ||||||| |||||||||||||||    
T  6269613 catgggcggttctaccgtgtagcgatcccgggcggtcgtccggactcgatcgataatttttgcacattagactcaacccaaaagcccattaacacattta 6269514  T
Q  370 caaaaagaaaaatttgggcaatctaaaaattgtcacacgcaaataggtattggaattttatttagcacactattgac 446  Q
    |||||||||||||||||||||||| |||||||||||||| |||||||| ||||||||||||||||||||||||||||    
T  6269513 caaaaagaaaaatttgggcaatctgaaaattgtcacacgtaaataggtcttggaattttatttagcacactattgac 6269437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 270 - 446
Target Start/End: Original strand, 19390126 - 19390302
Alignment:
Q  270 catgggcggttctaccgtatggcgaccccgggcggtcgcccgggctcaatcgataatttttgcacattagactcaatccaaaagtccattaacacattta 369  Q
    |||||| ||||||||||| ||||||||||||||||||| ||||| || |||||||||||||||||||||||||||| | ||||||| |||||||||||||    
T  19390126 catgggaggttctaccgtgtggcgaccccgggcggtcgtccgggttcgatcgataatttttgcacattagactcaacctaaaagtctattaacacattta 19390225  T
Q  370 caaaaagaaaaatttgggcaatctaaaaattgtcacacgcaaataggtattggaattttatttagcacactattgac 446  Q
    |||||||||||||||||||||||| |||||||||||||| |||||||| ||||||||||||||||||||||||||||    
T  19390226 caaaaagaaaaatttgggcaatctgaaaattgtcacacgtaaataggtcttggaattttatttagcacactattgac 19390302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 274 - 445
Target Start/End: Complemental strand, 34084305 - 34084134
Alignment:
Q  274 ggcggttctaccgtatggcgaccccgggcggtcgcccgggctcaatcgataatttttgcacattagactcaatccaaaagtccattaacacatttacaaa 373  Q
    ||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| | |||| | |||||||||||||||||||||||||    
T  34084305 ggcggttctaccgtatggcgaccccgggcggtcgcccggactcgatcgataatttttgcacattaaattcaaccaaaaagtccattaacacatttacaaa 34084206  T
Q  374 aagaaaaatttgggcaatctaaaaattgtcacacgcaaataggtattggaattttatttagcacactattga 445  Q
    |||||||||||||||||| | |||||| |||||||||||||||| |||||||||||||||||||||||||||    
T  34084205 aagaaaaatttgggcaatatgaaaattatcacacgcaaataggtcttggaattttatttagcacactattga 34084134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 270 - 446
Target Start/End: Original strand, 39771770 - 39771946
Alignment:
Q  270 catgggcggttctaccgtatggcgaccccgggcggtcgcccgggctcaatcgataatttttgcacattagactcaatccaaaagtccattaacacattta 369  Q
    |||||||||||| ||||| | ||||||||||||||||||||||||||  ||||||||||||||||||||||||||| ||||||| |||||||||||||||    
T  39771770 catgggcggttccaccgtgtagcgaccccgggcggtcgcccgggctcggtcgataatttttgcacattagactcaacccaaaagcccattaacacattta 39771869  T
Q  370 caaaaagaaaaatttgggcaatctaaaaattgtcacacgcaaataggtattggaattttatttagcacactattgac 446  Q
     ||||||||||||||||||||||| |||||||||||||| |||||||| ||| ||||||||||  ||||||||||||    
T  39771870 taaaaagaaaaatttgggcaatctgaaaattgtcacacgtaaataggtcttgaaattttatttgacacactattgac 39771946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 270 - 456
Target Start/End: Complemental strand, 11018399 - 11018212
Alignment:
Q  270 catgggcggttctaccgtatggcgaccccgggcggtcgcccgggctcaatcgataatttttgcacattagactcaatccaaaagtccattaacacattta 369  Q
    |||||||||||  |||||  |||||| |||||||||||||| ||||| |||||||||||||||||||||||||||| ||||||| | ||||||||| |||    
T  11018399 catgggcggtttcaccgtccggcgactccgggcggtcgcccaggctcgatcgataatttttgcacattagactcaacccaaaagccaattaacacactta 11018300  T
Q  370 caaaaagaaaaatttgggcaatctaaaaattgtcacacgcaaataggtattggaattttatttagcacactattgac-ggttcatctc 456  Q
    |||||||||||||||||||||||| |||||| |||||||||||||||| |  |||||||||||||||||| |||||| ||||||||||    
T  11018299 caaaaagaaaaatttgggcaatctgaaaattctcacacgcaaataggtctcagaattttatttagcacacaattgacgggttcatctc 11018212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 290 - 456
Target Start/End: Original strand, 45182981 - 45183148
Alignment:
Q  290 ggcgaccccgggcggtcgcccgggctcaatcgataatttttgcacattagactcaatccaaaagtccattaacacatttacaaaaagaaaaatttgggca 389  Q
    ||||||||||||||||||||||||||| ||||||||||||||| |||||||| ||| ||||||| | ||||||||| |||||||||||||||||||||||    
T  45182981 ggcgaccccgggcggtcgcccgggctcgatcgataatttttgcgcattagacccaacccaaaagccaattaacacacttacaaaaagaaaaatttgggca 45183080  T
Q  390 atctaaaaattgtcacacgcaaataggtattggaattttatttagcacactattgac-ggttcatctc 456  Q
    |||| |||||| |||||| ||||||||| | |||||||||||||||||||||||||| ||||||||||    
T  45183081 atctgaaaattctcacacacaaataggtctcggaattttatttagcacactattgacgggttcatctc 45183148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 290 - 456
Target Start/End: Complemental strand, 6931061 - 6930894
Alignment:
Q  290 ggcgaccccgggcggtcgcccgggctcaatcgataatttttgcacattagactcaatccaaaagtccattaacacatttacaaaaagaaaaatttgggca 389  Q
    ||||||||||| ||||||||||||||| ||||||||||||||| |||||||  ||| ||||||| | |||||||||||||||||||||||||||| ||||    
T  6931061 ggcgaccccggacggtcgcccgggctcgatcgataatttttgcgcattagatccaacccaaaagccaattaacacatttacaaaaagaaaaatttaggca 6930962  T
Q  390 atctaaaaattgtcacacgcaaataggtattggaattttatttagcacactattgacg-gttcatctc 456  Q
    |||| |||||| |||||||||||||||| | ||||||||||||||||||||||||||| |||||||||    
T  6930961 atctgaaaattctcacacgcaaataggtctcggaattttatttagcacactattgacgagttcatctc 6930894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 273 - 456
Target Start/End: Complemental strand, 40081922 - 40081741
Alignment:
Q  273 gggcggttctaccgtatggcgaccccgggcggtcgcccgggctcaatcgataatttttgcacattagactcaatccaaaagtccattaacacatttacaa 372  Q
    ||||||||||||||||||||||| | ||  |||||||||||||| |||||||||||||| ||||||||||||| |||||||  |||||||||||||||||    
T  40081922 gggcggttctaccgtatggcgactctgga-ggtcgcccgggctcgatcgataatttttgaacattagactcaa-ccaaaagctcattaacacatttacaa 40081825  T
Q  373 aaagaaaaatttgggcaatctaaaaattgtcacacgcaaataggtattggaattttatttagcacactattgac-ggttcatctc 456  Q
    ||||||||||||||||||| | ||||||||||||||||||||| | |||| ||||| ||||||||||||||||| ||||||||||    
T  40081824 aaagaaaaatttgggcaatttgaaaattgtcacacgcaaatagatcttgg-attttttttagcacactattgacgggttcatctc 40081741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 290 - 441
Target Start/End: Complemental strand, 19565668 - 19565517
Alignment:
Q  290 ggcgaccccgggcggtcgcccgggctcaatcgataatttttgcacattagactcaatccaaaagtccattaacacatttacaaaaagaaaaatttgggca 389  Q
    ||||| |||||||||||||||||| ||||||||||||||||||||||||||| ||| | |||| ||||||||||||||||||||||||||||||||| ||    
T  19565668 ggcgatcccgggcggtcgcccgggttcaatcgataatttttgcacattagacccaaccaaaaaatccattaacacatttacaaaaagaaaaatttggaca 19565569  T
Q  390 atctaaaaattgtcacacgcaaataggtattggaattttatttagcacacta 441  Q
    |||| |||||| | |||||||||||||| | |||||||||||||||||||||    
T  19565568 atctgaaaattcttacacgcaaataggtctcggaattttatttagcacacta 19565517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 290 - 441
Target Start/End: Original strand, 45335875 - 45336025
Alignment:
Q  290 ggcgaccccgggcggtcgcccgggctcaatcgataatttttgcacattagactcaatccaaaagtccattaacacatttacaaaaagaaaaatttgggca 389  Q
    ||||||| ||||||||||||||| ||||||||||||||||| |||||||||| ||| | ||||||| |||||||||||||||||||||||||| ||||||    
T  45335875 ggcgacctcgggcggtcgcccggactcaatcgataatttttacacattagacccaaccaaaaagtc-attaacacatttacaaaaagaaaaatctgggca 45335973  T
Q  390 atctaaaaattgtcacacgcaaataggtattggaattttatttagcacacta 441  Q
    |||| |||||| | |||||||||||||| |||||||||||||||||||||||    
T  45335974 atctgaaaattcttacacgcaaataggtcttggaattttatttagcacacta 45336025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 269 - 445
Target Start/End: Complemental strand, 6503757 - 6503581
Alignment:
Q  269 gcatgggcggttctaccgtatggcgaccccgggcggtcgcccgggctcaatcgataatttttgcacattagactcaatccaaaagtccattaacacattt 368  Q
    ||||||||||||  |||||  ||||||||||||||||||||||||||| |||||| ||||||||| ||||||||||| ||||||| | |||| |||| ||    
T  6503757 gcatgggcggtttcaccgtccggcgaccccgggcggtcgcccgggctcgatcgattatttttgcaaattagactcaacccaaaagccaattagcacactt 6503658  T
Q  369 acaaaaagaaaaatttgggcaatctaaaaattgtcacacgcaaataggtattggaattttatttagcacactattga 445  Q
    ||||||||||||||||  ||||||| |||||| ||||| |||||||||| | ||| ||||||||||||||| |||||    
T  6503657 acaaaaagaaaaatttaagcaatctgaaaattctcacaggcaaataggtctcggatttttatttagcacacaattga 6503581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 289 - 456
Target Start/End: Original strand, 27935177 - 27935345
Alignment:
Q  289 tggcgaccccgggcggtcgcccgggctcaatcgataatttttgcacattagactcaatccaaaagtccattaacacatttacaaaaagaaaaatttgggc 388  Q
    |||| |||| |||| ||||||||||||| ||||||||||||||||||||| || ||| |||||||  |||||||||| ||||||||||||||||||||||    
T  27935177 tggcaaccctgggcagtcgcccgggctcgatcgataatttttgcacattaaacccaacccaaaagctcattaacacacttacaaaaagaaaaatttgggc 27935276  T
Q  389 aatctaaaaattgtcacacgcaaataggtattggaattttatttagcacactattgac-ggttcatctc 456  Q
    ||||| |||||| ||| ||| |||||||| | |||||||||||||||| ||||||||| ||||||||||    
T  27935277 aatctgaaaattctcatacgaaaataggtctcggaattttatttagcatactattgacgggttcatctc 27935345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 290 - 456
Target Start/End: Original strand, 33040953 - 33041120
Alignment:
Q  290 ggcgaccccgggcggtcgcccgggctcaatcgataatttttgcacattagactcaatccaaaagtccattaacacatttacaaaaagaaaaatttgggca 389  Q
    ||||||||||||||||||| ||||||| || ||||||||||||| ||||||| ||| |||||||   ||||||||| |||||||||||||||||||  ||    
T  33040953 ggcgaccccgggcggtcgctcgggctcgattgataatttttgcatattagacccaacccaaaagctaattaacacacttacaaaaagaaaaatttgaaca 33041052  T
Q  390 atctaaaaattgtcacacgcaaataggtattggaattttatttagcacactattgac-ggttcatctc 456  Q
    || | |||||| |||||||||||||||| | |||||||||||||||||||||||||| ||||||||||    
T  33041053 atttgaaaattttcacacgcaaataggtctcggaattttatttagcacactattgacgggttcatctc 33041120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 36 - 195
Target Start/End: Original strand, 44253879 - 44254036
Alignment:
Q  36 tatcatacaagacgtacgataggggacaaagacaaaactgtacaaggggcctgaatttgcggtaaccccaaaaccaaacctaaatctactgtcatgacag 135  Q
    ||||||||||| | | ||||||||||||||||| |||||| |||| ||||| |||||||||||  ||| |||| |||||| ||  |||||||||||||||    
T  44253879 tatcatacaaggcatgcgataggggacaaagacgaaactgaacaaagggcccgaatttgcggt--cccaaaaatcaaaccaaatactactgtcatgacag 44253976  T
Q  136 cagcactgccgatgccaacacagcaggcagtaaccgcgccagaccccaaactcgcagctg 195  Q
    |||||||||||  ||||||| ||||||||||||  |||||||||||||||| ||||||||    
T  44253977 cagcactgccgtagccaacatagcaggcagtaattgcgccagaccccaaacccgcagctg 44254036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 290 - 456
Target Start/End: Original strand, 35514266 - 35514429
Alignment:
Q  290 ggcgaccccgggcggtcgcccgggctcaatcgataatttttgcacattagactcaatccaaaagtccattaacacatttacaaaaagaaaaatttgggca 389  Q
    ||||||||||| |||||| |||||||| |||||||||||| ||| | ||||  ||| |||||||||||||||||||    ||||||||||||||||| ||    
T  35514266 ggcgaccccggacggtcgtccgggctcgatcgataattttcgcatactagatccaacccaaaagtccattaacaca----caaaaagaaaaatttggaca 35514361  T
Q  390 atctaaaaattgtcacacgcaaataggtattggaattttatttagcacactattgac-ggttcatctc 456  Q
    || | |||||| |||| ||||||||||| | |||||||||||| ||||||||||||| ||||||||||    
T  35514362 atatgaaaattctcactcgcaaataggtctaggaattttattttgcacactattgacgggttcatctc 35514429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 274 - 345
Target Start/End: Original strand, 22922141 - 22922212
Alignment:
Q  274 ggcggttctaccgtatggcgaccccgggcggtcgcccgggctcaatcgataatttttgcacattagactcaa 345  Q
    |||||||| |||||||||||| ||||||||||||| ||||||| |||||| |||||||||||||| ||||||    
T  22922141 ggcggttccaccgtatggcgatcccgggcggtcgctcgggctcgatcgatcatttttgcacattaaactcaa 22922212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 205 - 267
Target Start/End: Original strand, 44254064 - 44254126
Alignment:
Q  205 aaactcccctaatgcaaaagacaatcctttgggttccaactccattcgtataaaagacatgga 267  Q
    ||| |||||||| |||||||||||||||| ||||||||||||||||| || ||||||||||||    
T  44254064 aaattcccctaacgcaaaagacaatccttcgggttccaactccattcatagaaaagacatgga 44254126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 312 - 416
Target Start/End: Original strand, 5135291 - 5135397
Alignment:
Q  312 ggctcaatcgataatttttgcacattagactcaatccaaaagtccattaacacatttacaaaaagaaaaatttgggc--aatctaaaaattgtcacacgc 409  Q
    ||||| |||||| ||||||| ||||||||| ||| | |||||  |||||||||| |||||||||||||||||||| |  ||||  |||||| |||||| |    
T  5135291 ggctcgatcgattatttttgtacattagacccaacctaaaagctcattaacacacttacaaaaagaaaaatttggacaaaatccgaaaattctcacacac 5135390  T
Q  410 aaatagg 416  Q
    |||||||    
T  5135391 aaatagg 5135397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 290 - 339
Target Start/End: Original strand, 5354709 - 5354758
Alignment:
Q  290 ggcgaccccgggcggtcgcccgggctcaatcgataatttttgcacattag 339  Q
    ||||||||||||||||||||||||||| |||  |||||||  ||||||||    
T  5354709 ggcgaccccgggcggtcgcccgggctcgatccttaattttctcacattag 5354758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 290 - 327
Target Start/End: Original strand, 6890998 - 6891035
Alignment:
Q  290 ggcgaccccgggcggtcgcccgggctcaatcgataatt 327  Q
    |||||| |||||||||||||||||||| ||||||||||    
T  6890998 ggcgacaccgggcggtcgcccgggctcgatcgataatt 6891035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 409 - 456
Target Start/End: Original strand, 22922214 - 22922262
Alignment:
Q  409 caaataggtattggaattttatttagcacactattgac-ggttcatctc 456  Q
    ||||||| | ||||||||||||||| |||||||||||| ||||||||||    
T  22922214 caaatagatcttggaattttatttaacacactattgacgggttcatctc 22922262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 133; Significance: 6e-69; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 273 - 456
Target Start/End: Complemental strand, 29728570 - 29728386
Alignment:
Q  273 gggcggttctaccgtatggcgaccccgggcggtcgcccgggctcaatcgataatttttgcacattagactcaatccaaaagtccattaacacatttacaa 372  Q
    |||||||||||||||||||||||||||| |||||||||| |||| |||||||| ||||||||||||||||||| |||||||  |||||||||||||||||    
T  29728570 gggcggttctaccgtatggcgaccccggacggtcgcccgtgctcgatcgataaattttgcacattagactcaacccaaaagctcattaacacatttacaa 29728471  T
Q  373 aaagaaaaatttgggcaatctaaaaattgtcacacgcaaataggtattggaattttatttagcacactattgac-ggttcatctc 456  Q
    ||||||||||||||||||||| |||||||| |||||||||||||| || ||||||||||||||||||||||||| ||||||||||    
T  29728470 aaagaaaaatttgggcaatctgaaaattgtgacacgcaaataggtcttcgaattttatttagcacactattgacgggttcatctc 29728386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 131; E-Value: 9e-68
Query Start/End: Original strand, 274 - 448
Target Start/End: Original strand, 15838270 - 15838443
Alignment:
Q  274 ggcggttctaccgtatggcgaccccgggcggtcgcccgggctcaatcgataatttttgcacattagactcaatccaaaagtccattaacacatttacaaa 373  Q
    ||||||||||||||||||||||||||||||||| ||||||||| || |||||||||||||||||| |||||| | |||||||||||||||||||||| ||    
T  15838270 ggcggttctaccgtatggcgaccccgggcggtcacccgggctcgattgataatttttgcacattaaactcaaccaaaaagtccattaacacatttac-aa 15838368  T
Q  374 aagaaaaatttgggcaatctaaaaattgtcacacgcaaataggtattggaattttatttagcacactattgacgg 448  Q
    |||||||||||||||||||| |||||| |||||||||||||||| ||||||||||||||||||||||||||||||    
T  15838369 aagaaaaatttgggcaatctgaaaattttcacacgcaaataggtcttggaattttatttagcacactattgacgg 15838443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 273 - 456
Target Start/End: Complemental strand, 3648978 - 3648794
Alignment:
Q  273 gggcggttctaccgtatggcgaccccgggcggtcgcccgggctcaatcgataatttttgcacattagactcaatccaaaagtccattaacacatttacaa 372  Q
    |||||||||||||||||||||| || || | ||||||||||||| ||||||||||||| |||||||||||||| ||||||| ||||||||||||||||||    
T  3648978 gggcggttctaccgtatggcgatccgggacagtcgcccgggctcgatcgataattttttcacattagactcaacccaaaagcccattaacacatttacaa 3648879  T
Q  373 aaagaaaaatttgggcaatctaaaaattgtcacacgcaaataggtattggaattttatttagcacactattgac-ggttcatctc 456  Q
    |||||||| |||||||||||| ||||||||||||||||| ||||| |||||||||||||||||||||||||||| ||||||||||    
T  3648878 aaagaaaattttgggcaatctgaaaattgtcacacgcaagtaggttttggaattttatttagcacactattgacgggttcatctc 3648794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 294 - 456
Target Start/End: Complemental strand, 16788188 - 16788025
Alignment:
Q  294 accccgggcggtcgcccgggctcaatcgataatttttgcacattagactcaatccaaaagtccattaacacatttacaaaaagaaaaatttgggcaatct 393  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| | ||||||||| |||||||||||||||||||||||||||    
T  16788188 accccgggcggtcgcccgggctcgatcgataatttttgcacattagactcaacccaaaagccaattaacacacttacaaaaagaaaaatttgggcaatct 16788089  T
Q  394 aaaaattgtcacacgcaaataggtattggaattttatttagcacactattgac-ggttcatctc 456  Q
     |||| | |||||||||||||||| |||||||||||||||||||||||||||| ||||||||||    
T  16788088 taaaactctcacacgcaaataggtcttggaattttatttagcacactattgacgggttcatctc 16788025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 270 - 445
Target Start/End: Complemental strand, 34137012 - 34136837
Alignment:
Q  270 catgggcggttctaccgtatggcgaccccgggcggtcgcccgggctcaatcgataatttttgcacattagactcaatccaaaagtccattaacacattta 369  Q
    |||||| ||||  ||||| ||||||||||| |||||||||||||||| |||||||||||||||||||||||||||| ||||||||| ||||||||| |||    
T  34137012 catgggtggtttcaccgtctggcgaccccgagcggtcgcccgggctcgatcgataatttttgcacattagactcaacccaaaagtcaattaacacactta 34136913  T
Q  370 caaaaagaaaaatttgggcaatctaaaaattgtcacacgcaaataggtattggaattttatttagcacactattga 445  Q
    |||||||||||||||||||||||| |||||| |||||||||||||||| | | ||||||||||||||||| |||||    
T  34136912 caaaaagaaaaatttgggcaatctgaaaattctcacacgcaaataggtctcgaaattttatttagcacacaattga 34136837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 290 - 445
Target Start/End: Original strand, 4404008 - 4404163
Alignment:
Q  290 ggcgaccccgggcggtcgcccgggctcaatcgataatttttgcacattagactcaatccaaaagtccattaacacatttacaaaaagaaaaatttgggca 389  Q
    ||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| ||||||| | ||||||| | |||||||||||||||||||||||    
T  4404008 ggcgaccccaggcggtcgcccgggctcgatcgataatttttgcacattagactcaacccaaaagccaattaacatacttacaaaaagaaaaatttgggca 4404107  T
Q  390 atctaaaaattgtcacacgcaaataggtattggaattttatttagcacactattga 445  Q
    ||||||||||| |||||||||||||||| | ||||||||||||||||||| |||||    
T  4404108 atctaaaaattctcacacgcaaataggtctcggaattttatttagcacacaattga 4404163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 270 - 446
Target Start/End: Original strand, 39914495 - 39914670
Alignment:
Q  270 catgggcggttctaccgtatggcgaccccgggcggtcgcccgggctcaatcgataatttttgcacattagactcaatccaaaagtccattaacacattta 369  Q
    ||||| |||||| ||||| | |||||||||||||||||||||||||| |||||||||||||||||||||||||||| | |||||  ||||||||||||||    
T  39914495 catggacggttccaccgtgtagcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagactcaaccaaaaagctcattaacacattta 39914594  T
Q  370 caaaaagaaaaatttgggcaatctaaaaattgtcacacgcaaataggtattggaattttatttagcacactattgac 446  Q
     ||||| ||||||||||||||| | |||||||||||| | |||||||| |||||||||||||| |||||||||||||    
T  39914595 taaaaa-aaaaatttgggcaatttgaaaattgtcacaagtaaataggtcttggaattttatttggcacactattgac 39914670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 290 - 456
Target Start/End: Original strand, 23402108 - 23402275
Alignment:
Q  290 ggcgaccccgggcggtcgcccgggctcaatcgataatttttgcacattagactcaatccaaaagtccattaacacatttacaaaaagaaaaatttgggca 389  Q
    ||||||||||||||||||||||||||| ||||||||| |||||| ||||||| ||| ||||||| | ||||||||| |||||||||||||||||||||||    
T  23402108 ggcgaccccgggcggtcgcccgggctcgatcgataatctttgcatattagacccaacccaaaagccaattaacacacttacaaaaagaaaaatttgggca 23402207  T
Q  390 atctaaaaattgtcacacgcaaataggtattggaattttatttagcacactattgac-ggttcatctc 456  Q
    |||| |||||| |||||||||||||||| | | ||||||||||| |||||||||||| ||||||||||    
T  23402208 atctgaaaattctcacacgcaaataggtctcgaaattttatttaacacactattgactggttcatctc 23402275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 290 - 456
Target Start/End: Original strand, 36408551 - 36408718
Alignment:
Q  290 ggcgaccccgggcggtcgcccgggctcaatcgataatttttgcacattagactcaatccaaaagtccattaacacatttacaaaaagaaaaatttgggca 389  Q
    ||||||| ||||||||||||||||||| |||||||||||||||||||||||  ||| |||||||||||||||||||||||||||||||||| ||| ||||    
T  36408551 ggcgacctcgggcggtcgcccgggctcgatcgataatttttgcacattagatccaacccaaaagtccattaacacatttacaaaaagaaaatttttggca 36408650  T
Q  390 atctaaaaattgtcacacgcaaataggtattggaattttatttagcacactattgacgg-ttcatctc 456  Q
    || | |||||| | |||||| ||||||| |  |||||||||||| |||||||||| ||| ||||||||    
T  36408651 atttgaaaattcttacacgctaataggtctcagaattttatttaacacactattgccggattcatctc 36408718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 312 - 444
Target Start/End: Original strand, 9877242 - 9877374
Alignment:
Q  312 ggctcaatcgataatttttgcacattagactcaatccaaaagtccattaacacatttacaaaaagaaaaatttgggcaatctaaaaattgtcacacgcaa 411  Q
    ||||| || |||||||||||||||||||||  || ||||||||| ||||||||| ||||||||||||||||||||||||||| |||||| ||||| ||||    
T  9877242 ggctcgattgataatttttgcacattagacctaacccaaaagtcaattaacacacttacaaaaagaaaaatttgggcaatctgaaaattctcacatgcaa 9877341  T
Q  412 ataggtattggaattttatttagcacactattg 444  Q
    |||||| | | ||||||||||||||||||||||    
T  9877342 ataggtctcgaaattttatttagcacactattg 9877374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 290 - 445
Target Start/End: Complemental strand, 2729363 - 2729208
Alignment:
Q  290 ggcgaccccgggcggtcgcccgggctcaatcgataatttttgcacattagactcaatccaaaagtccattaacacatttacaaaaagaaaaatttgggca 389  Q
    ||||||||||||||| ||||||||||| ||||||||||||| ||||||| |  ||||||||||| ||||||||||| ||| |||||||||  ||| ||||    
T  2729363 ggcgaccccgggcggacgcccgggctcgatcgataatttttacacattaaatccaatccaaaagcccattaacacacttataaaaagaaattttttggca 2729264  T
Q  390 atctaaaaattgtcacacgcaaataggtattggaattttatttagcacactattga 445  Q
    || | |||| | ||| |||||||||||| |   |||||||||||||||||||||||    
T  2729263 atttgaaaactctcatacgcaaataggtctcaaaattttatttagcacactattga 2729208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 322 - 456
Target Start/End: Original strand, 42230971 - 42231104
Alignment:
Q  322 ataatttttgcacattagactcaatccaaaagtccattaacacatttacaaaaagaaaaatttgggcaatctaaaaattgtcacacgcaaataggtattg 421  Q
    ||||||||||||||||| |  |||  |||||||||||||||||  ||||||||||||||||||||||||| | |||||| ||| | |||||||||| |      
T  42230971 ataatttttgcacattaaatccaactcaaaagtccattaacac--ttacaaaaagaaaaatttgggcaatttgaaaattctcatatgcaaataggtctca 42231068  T
Q  422 gaattttatttagcacactattgacgg-ttcatctc 456  Q
    ||||||||||||||||||||||||||| ||||||||    
T  42231069 gaattttatttagcacactattgacggattcatctc 42231104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 306 - 416
Target Start/End: Original strand, 3435285 - 3435397
Alignment:
Q  306 cgcccgggctcaatcgataatttttgcacattagactcaatccaaaagtccattaacacatttacaaaaagaaaaatttgggc--aatctaaaaattgtc 403  Q
    ||||||||||  |||||||||||||||||||||||| ||| ||||||  ||||||||||| ||||||||||||||||||||||  ||||| |||||| ||    
T  3435285 cgcccgggcttgatcgataatttttgcacattagacccaacccaaaaacccattaacacacttacaaaaagaaaaatttgggcaaaatctgaaaattctc 3435384  T
Q  404 acacgcaaatagg 416  Q
    | |||||||||||    
T  3435385 aaacgcaaatagg 3435397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 313 - 383
Target Start/End: Complemental strand, 40470637 - 40470567
Alignment:
Q  313 gctcaatcgataatttttgcacattagactcaatccaaaagtccattaacacatttacaaaaagaaaaatt 383  Q
    |||| |||||||||||||||||||||||| |||  |||||||||||||||||| ||| ||||| |||||||    
T  40470637 gctcgatcgataatttttgcacattagacccaaatcaaaagtccattaacacacttataaaaaaaaaaatt 40470567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 290 - 375
Target Start/End: Complemental strand, 10397207 - 10397122
Alignment:
Q  290 ggcgaccccgggcggtcgcccgggctcaatcgataatttttgcacattagactcaatccaaaagtccattaacacatttacaaaaa 375  Q
    |||||| ||||||  |||||||||||||||||||||||| | ||||||||  |||| ||||||| | ||||||||| ||| |||||    
T  10397207 ggcgactccgggcactcgcccgggctcaatcgataatttcttcacattaggttcaacccaaaagccgattaacacagttaaaaaaa 10397122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0069 (Bit Score: 129; Significance: 1e-66; HSPs: 1)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 270 - 446
Target Start/End: Original strand, 17822 - 17998
Alignment:
Q  270 catgggcggttctaccgtatggcgaccccgggcggtcgcccgggctcaatcgataatttttgcacattagactcaatccaaaagtccattaacacattta 369  Q
    |||||||||||||||||| ||||||||||| ||| ||| |||||||| |||||||||||||||||||||||||||| ||||||| |||||||||||||||    
T  17822 catgggcggttctaccgtgtggcgaccccgagcgatcgtccgggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacattta 17921  T
Q  370 caaaaagaaaaatttgggcaatctaaaaattgtcacacgcaaataggtattggaattttatttagcacactattgac 446  Q
    |||||||||||||||||||||||| |||||||||||| | |||||||| ||| ||||||||||||||||||||||||    
T  17922 caaaaagaaaaatttgggcaatctgaaaattgtcacatgtaaataggtcttgaaattttatttagcacactattgac 17998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 122; Significance: 2e-62; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 269 - 446
Target Start/End: Complemental strand, 480645 - 480468
Alignment:
Q  269 gcatgggcggttctaccgtatggcgaccccgggcggtcgcccgggctcaatcgataatttttgcacattagactcaatccaaaagtccattaacacattt 368  Q
    ||||||||||||| ||||| | |||||||||||||||||||||||||| |||||||||||||||||||||||||||| | |||||  |||||||||||||    
T  480645 gcatgggcggttccaccgtgtagcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagactcaaccaaaaagctcattaacacattt 480546  T
Q  369 acaaaaagaaaaatttgggcaatctaaaaattgtcacacgcaaataggtattggaattttatttagcacactattgac 446  Q
    | ||||||||||||||||||||| | |||||||||||||| |||||||| |||||||||||||| |||||||||||||    
T  480545 ataaaaagaaaaatttgggcaatttgaaaattgtcacacgtaaataggtcttggaattttatttggcacactattgac 480468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2142 (Bit Score: 117; Significance: 2e-59; HSPs: 1)
Name: scaffold2142
Description:

Target: scaffold2142; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 270 - 446
Target Start/End: Original strand, 502 - 678
Alignment:
Q  270 catgggcggttctaccgtatggcgaccccgggcggtcgcccgggctcaatcgataatttttgcacattagactcaatccaaaagtccattaacacattta 369  Q
    |||||||||||| ||||| | |||| ||||||||||||||||||||| |||||||||||||||||||||||||||| | |||||  ||||||||||||||    
T  502 catgggcggttccaccgtgtagcgatcccgggcggtcgcccgggctcgatcgataatttttgcacattagactcaaccaaaaagctcattaacacattta 601  T
Q  370 caaaaagaaaaatttgggcaatctaaaaattgtcacacgcaaataggtattggaattttatttagcacactattgac 446  Q
     ||||||||||||||||||||| | |||||||||||||| |||||||| |||||||||||||| |||||||||||||    
T  602 taaaaagaaaaatttgggcaatttgaaaattgtcacacgtaaataggtcttggaattttatttggcacactattgac 678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0502 (Bit Score: 108; Significance: 5e-54; HSPs: 1)
Name: scaffold0502
Description:

Target: scaffold0502; HSP #1
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 290 - 456
Target Start/End: Original strand, 5230 - 5397
Alignment:
Q  290 ggcgaccccgggcggtcgcccgggctcaatcgataatttttgcacattagactcaatccaaaagtccattaacacatttacaaaaagaaaaatttgggca 389  Q
    ||||||||||||||||||||||||||| ||| |||||||||||||||||||| ||||| ||||| | ||||||||| |||||||||||||| ||||||||    
T  5230 ggcgaccccgggcggtcgcccgggctcgatcaataatttttgcacattagacccaatctaaaagccaattaacacacttacaaaaagaaaattttgggca 5329  T
Q  390 atctaaaaattgtcacacgcaaataggtattggaattttatttagcacactattgac-ggttcatctc 456  Q
    |||| |||||| ||||| |||||||||| | |||||||||||||||||||||||||| ||||||||||    
T  5330 atctgaaaattctcacatgcaaataggtctcggaattttatttagcacactattgacgggttcatctc 5397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0154 (Bit Score: 96; Significance: 7e-47; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 290 - 456
Target Start/End: Original strand, 31480 - 31647
Alignment:
Q  290 ggcgaccccgggcggtcgcccgggctcaatcgataatttttgcacattagactcaatccaaaagtccattaacacatttacaaaaagaaaaatttgggca 389  Q
    ||||||||| | ||||||||||||||| |||||||||||||||||| ||||| ||| ||||||| ||||||||||| |||||||||||||||||||| ||    
T  31480 ggcgaccccagacggtcgcccgggctcgatcgataatttttgcacactagacccaacccaaaagcccattaacacacttacaaaaagaaaaatttggaca 31579  T
Q  390 atctaaaaattgtcacacgcaaataggtattggaattttatttagcacactattgac-ggttcatctc 456  Q
    |||| |||||| |||| ||||||||||| | | |||||||||| ||||||||||||| ||||||||||    
T  31580 atctgaaaattctcactcgcaaataggtctagtaattttattttgcacactattgacaggttcatctc 31647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 93; Significance: 4e-45; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 309 - 456
Target Start/End: Original strand, 52944 - 53092
Alignment:
Q  309 ccgggctcaatcgataatttttgcacattagactcaatccaaaagtccattaacacatttacaaaaagaaaaatttgggcaatctaaaaattgtcacacg 408  Q
    |||||||| ||||||||||||||||||||||| | || ||||||| | |||||||||||||||||||||||||||||| |||||| |||||| ||||| |    
T  52944 ccgggctcgatcgataatttttgcacattagatttaacccaaaagccaattaacacatttacaaaaagaaaaatttggacaatctgaaaattctcacatg 53043  T
Q  409 caaataggtattggaattttatttagcacactattgac-ggttcatctc 456  Q
    ||||||||| | |||||||||||||||||||||||||| ||||||||||    
T  53044 caaataggtctcggaattttatttagcacactattgacgggttcatctc 53092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University