View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18958_low_12 (Length: 456)

Name: NF18958_low_12
Description: NF18958
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18958_low_12
NF18958_low_12
[»] chr2 (1 HSPs)
chr2 (1-440)||(12765548-12765987)
[»] scaffold0989 (1 HSPs)
scaffold0989 (173-401)||(709-937)
[»] chr8 (6 HSPs)
chr8 (258-377)||(25622997-25623116)
chr8 (258-377)||(7029836-7029953)
chr8 (266-377)||(25656499-25656610)
chr8 (258-377)||(25805369-25805488)
chr8 (258-377)||(25810399-25810518)
chr8 (258-377)||(25823093-25823212)
[»] scaffold0466 (1 HSPs)
scaffold0466 (258-377)||(3352-3471)
[»] chr7 (2 HSPs)
chr7 (299-360)||(11577217-11577278)
chr7 (271-339)||(18008572-18008640)


Alignment Details
Target: chr2 (Bit Score: 420; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 1 - 440
Target Start/End: Complemental strand, 12765987 - 12765548
Alignment:
Q  1 atttgagatctaattagtagagtatcttctccataattcttacatcttctagcttctcaaaatatattttaattaatttgaaatagcgataactctagat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12765987 atttgagatctaattagtagagtatcttctccataattcttacatcttctagcttctcaaaatatattttaattaatttgaaatagcgataactctagat 12765888  T
Q  101 aaatgttcagaaatcatttatgactctttcatatgcaaagatttgaactcaccttagagtttcgaaaaacaacttctttactttgccctctcctttacaa 200  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12765887 aaatgttcagaaatcatttatgactctttcatatgcaatgatttgaactcaccttagagtttcgaaaaacaacttctttactttgccctctcctttacaa 12765788  T
Q  201 gagttttgaaacctctcctataccttcttaatgcatattgaatttgaaattttcttgaactcatctttatccaatgcttgatagacgaggaatcgagatt 300  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  12765787 gagttttgaaacctctcctataccttcttaatgcattttgaatttgaaattttcttgaactcatctttatccaatgcttgatagatgaggaatcgagatt 12765688  T
Q  301 tcttgtctctctttcttgaatatttcaaaacatatctttgtgcttgagttaataaatccttgtcttgtgattccttacaacctttcttaacaacctccca 400  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||    
T  12765687 tcttgtctctctttcttgaatatttcaaaacatatctttgtgcttgagttaataaatcattgtcttgtgattccttacaaccttttttaacaacctccca 12765588  T
Q  401 agttcaccaataagagcctttgttttcatacaataattat 440  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  12765587 agttcaccaataagagcctttgttttcatacaataattat 12765548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0989 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: scaffold0989
Description:

Target: scaffold0989; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 173 - 401
Target Start/End: Original strand, 709 - 937
Alignment:
Q  173 cttctttactttgccctctcctttacaagagttttgaaacctctcctataccttcttaatgcatattgaatttgaaattttcttgaactcatctttatcc 272  Q
    ||||||||| ||| | |||||||  |||||| ||| || | ||||| || ||| ||||  | || ||| |||||||||||||| ||||||||||| ||||    
T  709 cttctttaccttgtcttctccttggcaagaggttttaagcttctcccatgcctccttagcggatgttgcatttgaaattttctcgaactcatcttcatcc 808  T
Q  273 aatgcttgatagacgaggaatcgagatttcttgtctctctttcttgaatatttcaaaacatatctttgtgcttgagttaataaatccttgtcttgtgatt 372  Q
    |||||||| |||| ||||||  |||  || |||||||||||||||||||  ||||||   | ||||||||||| ||||||  ||||||  ||||||||||    
T  809 aatgcttggtagatgaggaagagagcctttttgtctctctttcttgaatccttcaaagtgtctctttgtgctttagttaaggaatcctcatcttgtgatt 908  T
Q  373 ccttacaacctttcttaacaacctcccaa 401  Q
    ||||| | ||||| | |||||||||||||    
T  909 ccttatagcctttttcaacaacctcccaa 937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 7e-16; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 258 - 377
Target Start/End: Original strand, 25622997 - 25623116
Alignment:
Q  258 aactcatctttatccaatgcttgatagacgaggaatcgagatttcttgtctctctttcttgaatatttcaaaacatatctttgtgcttgagttaataaat 357  Q
    ||||||| |||||| | ||||||||||| ||||||  || ||||||||||||| |||||| |||  ||||||| ||||| |||||||||| ||||  |||    
T  25622997 aactcatatttatctagtgcttgatagatgaggaagagatatttcttgtctctatttcttaaatccttcaaaatatatcattgtgcttgatttaacgaat 25623096  T
Q  358 ccttgtcttgtgattcctta 377  Q
    | |  |||||||||||||||    
T  25623097 cttcatcttgtgattcctta 25623116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 258 - 377
Target Start/End: Complemental strand, 7029953 - 7029836
Alignment:
Q  258 aactcatctttatccaatgcttgatagacgaggaatcgagatttcttgtctctctttcttgaatatttcaaaacatatctttgtgcttgagttaataaat 357  Q
    |||||||||| || ||||||||| |||| ||||||  ||| ||||||| |||||||||||||||  ||||||  |||| |||||| |||||||  | |||    
T  7029953 aactcatcttcatacaatgcttggtagaagaggaagggagctttcttgcctctctttcttgaatccttcaaa--atatttttgtgtttgagttggtgaat 7029856  T
Q  358 ccttgtcttgtgattcctta 377  Q
    | |  |||||||||||||||    
T  7029855 cttcatcttgtgattcctta 7029836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 266 - 377
Target Start/End: Original strand, 25656499 - 25656610
Alignment:
Q  266 tttatccaatgcttgatagacgaggaatcgagatttcttgtctctctttcttgaatatttcaaaacatatctttgtgcttgagttaataaatccttgtct 365  Q
    |||||| | |||||| |||| ||||||  || ||||||||||||| |||||| |||  ||||||| ||||| |||| ||||| ||||  |||| |  |||    
T  25656499 tttatctagtgcttggtagatgaggaagagatatttcttgtctctatttcttaaatccttcaaaatatatcattgtacttgatttaacgaatcttcatct 25656598  T
Q  366 tgtgattcctta 377  Q
    ||||||||||||    
T  25656599 tgtgattcctta 25656610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 258 - 377
Target Start/End: Original strand, 25805369 - 25805488
Alignment:
Q  258 aactcatctttatccaatgcttgatagacgaggaatcgagatttcttgtctctctttcttgaatatttcaaaacatatctttgtgcttgagttaataaat 357  Q
    ||||||| |||||| | |||||| |||| ||||||  || ||| ||||||||| ||| || |||  ||||||| ||||| |||||||||| ||||  |||    
T  25805369 aactcatatttatctagtgcttggtagatgaggaagagatattgcttgtctctatttattaaatccttcaaaatatatcattgtgcttgatttaacgaat 25805468  T
Q  358 ccttgtcttgtgattcctta 377  Q
    | |  |||||||||||||||    
T  25805469 cttcatcttgtgattcctta 25805488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 258 - 377
Target Start/End: Original strand, 25810399 - 25810518
Alignment:
Q  258 aactcatctttatccaatgcttgatagacgaggaatcgagatttcttgtctctctttcttgaatatttcaaaacatatctttgtgcttgagttaataaat 357  Q
    ||||||| |||||| | |||||| |||| ||||||  || ||| ||||||||| ||| || |||  ||||||| ||||| |||||||||| ||||  |||    
T  25810399 aactcatatttatctagtgcttggtagatgaggaagagatattgcttgtctctatttattaaatccttcaaaatatatcattgtgcttgatttaacgaat 25810498  T
Q  358 ccttgtcttgtgattcctta 377  Q
    | |  |||||||||||||||    
T  25810499 cttcatcttgtgattcctta 25810518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 258 - 377
Target Start/End: Original strand, 25823093 - 25823212
Alignment:
Q  258 aactcatctttatccaatgcttgatagacgaggaatcgagatttcttgtctctctttcttgaatatttcaaaacatatctttgtgcttgagttaataaat 357  Q
    ||||||| |||||| | |||||| |||| ||||||  || ||| ||||||||| ||| || |||  ||||||| ||||| |||||||||| ||||  |||    
T  25823093 aactcatatttatctagtgcttggtagatgaggaagagatattgcttgtctctatttattaaatccttcaaaatatatcattgtgcttgatttaacgaat 25823192  T
Q  358 ccttgtcttgtgattcctta 377  Q
    | |  |||||||||||||||    
T  25823193 cttcatcttgtgattcctta 25823212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0466 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0466
Description:

Target: scaffold0466; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 258 - 377
Target Start/End: Complemental strand, 3471 - 3352
Alignment:
Q  258 aactcatctttatccaatgcttgatagacgaggaatcgagatttcttgtctctctttcttgaatatttcaaaacatatctttgtgcttgagttaataaat 357  Q
    ||||||| |||||| | |||||| |||| ||||||  || ||||||| ||||| |||||| |||  ||||||| ||||| |||||||||| ||||  |||    
T  3471 aactcatatttatctagtgcttggtagatgaggaagagatatttcttatctctatttcttaaatccttcaaaatatatcattgtgcttgatttaacgaat 3372  T
Q  358 ccttgtcttgtgattcctta 377  Q
    | |  |||||||||||||||    
T  3371 cttcatcttgtgattcctta 3352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 299 - 360
Target Start/End: Complemental strand, 11577278 - 11577217
Alignment:
Q  299 tttcttgtctctctttcttgaatatttcaaaacatatctttgtgcttgagttaataaatcct 360  Q
    |||||||||||||||||||||||  |||||||  | |||||||||||||||||  |||||||    
T  11577278 tttcttgtctctctttcttgaatccttcaaaatttctctttgtgcttgagttagaaaatcct 11577217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 271 - 339
Target Start/End: Original strand, 18008572 - 18008640
Alignment:
Q  271 ccaatgcttgatagacgaggaatcgagatttcttgtctctctttcttgaatatttcaaaacatatcttt 339  Q
    |||||||||| |||| || |||| ||| ||| |||||||||||||||||||| || |||| || |||||    
T  18008572 ccaatgcttggtagatgatgaatagagcttttttgtctctctttcttgaatagtttaaaatatctcttt 18008640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University