View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18958_low_18 (Length: 388)
Name: NF18958_low_18
Description: NF18958
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18958_low_18 |
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Alignment Details
Target: chr3 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 20 - 369
Target Start/End: Complemental strand, 52544432 - 52544087
Alignment:
| Q |
20 |
tgcacaaacacacaatttaaaagttttgcacaagcacacaattcaagaagaatcaatatttcaagccataacagaacatattcaaaggcaagaaaagtca |
119 |
Q |
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| T |
52544432 |
tgcacaaacacacaatttaaaagttttgcacaagcacacaattcaagaagaatcaatatttcaagccataacagaacatattcaaaggcaagaaaagtca |
52544333 |
T |
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| Q |
120 |
ggaacatccaaccatgtaccatgcacgataggcttagttcagcataaaaggctagcattaaaataaaaaactgatgatgaagtatttctacaagcaatca |
219 |
Q |
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| T |
52544332 |
ggaacatccaaccatgtaccatgcacgataggcttagttcagcataaaaggctagcattaaaatcaaaaactgatgatgaagtatttctacaagcaatca |
52544233 |
T |
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| Q |
220 |
attgcgtcaagaccaccataaacaatcagagccaactgaatttatacacaaactgtatgatagacacaaagcatttatcaacaatcctataaacgggaca |
319 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
52544232 |
attgagtcaagaccaccataaacaatcagagccaactgaatttatacacaaactgtatgatagacacaaagcatttatcaacaatcctat----gggaca |
52544137 |
T |
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| Q |
320 |
tctagtaaagtgcattgatgaacgatccatcaaatgactaatctgacatc |
369 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52544136 |
tctagtaaagtgcattgatgaacgatccatcaaatgactaatctgacatc |
52544087 |
T |
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