View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18958_low_19 (Length: 366)
Name: NF18958_low_19
Description: NF18958
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18958_low_19 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 1 - 366
Target Start/End: Original strand, 32266272 - 32266634
Alignment:
| Q |
1 |
ccttattcatcatccctgatttcttaaatatagttgttacattgttattgtatttgcttctacaatcatcaaatccagatttatctgcttccaccttagg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32266272 |
ccttattcatcatccctgatttcttaaatatagttgttacattgttattgtatttgcttctacaatcatcaaatccagatttatctgcttccaccttagg |
32266371 |
T |
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| Q |
101 |
cctcttgaattcataggttggaacacttgaatctacaaatttgattttctttgaaccatatctgaaatccctcgaatctgaattattcgaaacaccacca |
200 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| |
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| T |
32266372 |
cctcttgaattcatagtttggaacacttgaatctacaaatttgattttctttgaaccatatctgaaatccctcaaatctgaattattcgaaa---cacca |
32266468 |
T |
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| Q |
201 |
atcccaaccattttcagcttctttttcttctccgcaacaaattcacgagcattattagctacaaatttgttaccatttctgataacaatcttcgatttcg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
32266469 |
atcccaaccattttcagcttctttttcttctccgcaacaaattcacgagcatgattagctacaaatttgttaccatttctgataacaatcttggatttcg |
32266568 |
T |
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| Q |
301 |
tctctaaaacaatctcattgttattatcagaagattcagaaacaaaacgacccttatgaccaaaaa |
366 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32266569 |
tctctagaacaatctcattgttattatcagaagattcagaaacaaaacgacccttatgaccaaaaa |
32266634 |
T |
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