View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18958_low_20 (Length: 349)
Name: NF18958_low_20
Description: NF18958
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18958_low_20 |
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Alignment Details
Target: chr1 (Bit Score: 276; Significance: 1e-154; HSPs: 8)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 12 - 332
Target Start/End: Complemental strand, 9086451 - 9086128
Alignment:
| Q |
12 |
aattctcaacaatacacagggagaagggaaagagttcgtcactgaagtagaaattatgggaaaaatacaccatatcaacgtggttcggttgcttggattt |
111 |
Q |
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| T |
9086451 |
aattctcaacaatacacagggagaaggtaaagagttcatcactgaagtagaaattatgggaaaaatacaccatatcaacgtggttcggttgcttggattt |
9086352 |
T |
|
| Q |
112 |
tgcgcagag----ggaatccatcgtgctcttgtatacaatttgtttccaaaaggttcactacaaagcttcatatttccgcctgataacaaggatcacttc |
207 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| |||||||||| |
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| T |
9086351 |
tgcgcagagctagggaatccatcgtgctcttgtatacaatttgtttccaaaaggttcactacaaagcttcatattttcacctgataacacggatcacttc |
9086252 |
T |
|
| Q |
208 |
atggggtgggagaagctgcaacaaattagtcttggtatcgcaaaaggaatcgagtatcttcatgagggttgtagccatccaatcctgcactttgacatta |
307 |
Q |
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| T |
9086251 |
atggggtgggagaagctgca-caaattagtcttggtatcgcaaaaggaatcgagtatcttcatgagggttgtagccatccaatcctgcactttgacatta |
9086153 |
T |
|
| Q |
308 |
aacctcacaatgttttgctagatga |
332 |
Q |
| |
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| ||||||||||||||||||||||| |
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| T |
9086152 |
accctcacaatgttttgctagatga |
9086128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 13 - 332
Target Start/End: Complemental strand, 9125619 - 9125300
Alignment:
| Q |
13 |
attctcaacaatacacagggagaagggaaagagttcgtcactgaagtagaaattatgggaaaaatacaccatatcaacgtggttcggttgcttggatttt |
112 |
Q |
| |
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|||||||||||||||||||||||||||| |||||| |||| ||||| ||||||||||| | ||| ||||| || ||||||||||| |||||||| | | |
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| T |
9125619 |
attctcaacaatacacagggagaagggatagagtttatcacagaagtggaaattatgggtacaatccaccacattaacgtggttcgcttgcttggctact |
9125520 |
T |
|
| Q |
113 |
gcgcagagggaatccatcgtgctcttgtatacaatttgtttccaaaaggttcactacaaagcttcatatttccgcctgataacaaggatcacttcatggg |
212 |
Q |
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| T |
9125519 |
gcgcagatggaatccatcgagctcttgtatacaatttgtttccaaaaggttcgctacaatgcttcatatttccaccggatgacaaggatcatttcatggg |
9125420 |
T |
|
| Q |
213 |
gtgggagaagctgcaacaaattagtcttggtatcgcaaaaggaatcgagtatcttcatgagggttgtagccatccaatcctgcactttgacattaaacct |
312 |
Q |
| |
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|||||||||||| |||| ||||||||||||| | ||||||||||| |||||||||||||||||||||||||||||||| || ||||||||||| || ||| |
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| T |
9125419 |
gtgggagaagctacaactaattagtcttggtgtagcaaaaggaattgagtatcttcatgagggttgtagccatccaattcttcactttgacatcaaccct |
9125320 |
T |
|
| Q |
313 |
cacaatgttttgctagatga |
332 |
Q |
| |
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|||||||||||||||||||| |
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| T |
9125319 |
cacaatgttttgctagatga |
9125300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 173; E-Value: 6e-93
Query Start/End: Original strand, 13 - 333
Target Start/End: Complemental strand, 9070151 - 9069831
Alignment:
| Q |
13 |
attctcaacaatacacagggagaagggaaagagttcgtcactgaagtagaaattatgggaaaaatacaccatatcaacgtggttcggttgcttggatttt |
112 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||| |||||||||| ||||||||||| ||||| ||||||||||| |||||||| |||||||| |||| |
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|
| T |
9070151 |
attctcaacaatacacaaggagaagggaaagagttcatcactgaagtggaaattatgggcaaaattcaccatatcaatgtggttcgtttgcttggctttt |
9070052 |
T |
|
| Q |
113 |
gcgcagagggaatccatcgtgctcttgtatacaatttgtttccaaaaggttcactacaaagcttcatatttccgcctgataacaaggatcacttcatggg |
212 |
Q |
| |
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||||||| ||| | || | ||||| ||||||||||| ||| | |||||||| || ||||||||||||||||| || |||||||||||| | |||||||| |
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| T |
9070051 |
gcgcagaaggagttcactgcgctctagtatacaattttttttcgaaaggttctctgcaaagcttcatatttccaccggataacaaggattatttcatggg |
9069952 |
T |
|
| Q |
213 |
gtgggagaagctgcaacaaattagtcttggtatcgcaaaaggaatcgagtatcttcatgagggttgtagccatccaatcctgcactttgacattaaacct |
312 |
Q |
| |
|
|||||||||||| |||||||||||| |||||| ||||||| ||||||||||||||||||||| |||||||||||||| | ||||||||||| || ||| |
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| T |
9069951 |
gtgggagaagctacaacaaattagtactggtatagcaaaagcaatcgagtatcttcatgagggctgtagccatccaattattcactttgacatcaaccct |
9069852 |
T |
|
| Q |
313 |
cacaatgttttgctagatgat |
333 |
Q |
| |
|
| |||||||||| |||||||| |
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| T |
9069851 |
cgcaatgttttgttagatgat |
9069831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 24 - 332
Target Start/End: Complemental strand, 8862030 - 8861722
Alignment:
| Q |
24 |
tacacagggagaagggaaagagttcgtcactgaagtagaaattatgggaaaaatacaccatatcaacgtggttcggttgcttggattttgcgcagaggga |
123 |
Q |
| |
|
|||| |||||||||||||||||||| ||| |||||| | ||||||||| ||||| ||||| |||||||||||||| |||||||| || |||||||| ||| |
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| T |
8862030 |
tacagagggagaagggaaagagttcatcaatgaagtgggaattatgggcaaaatccaccacatcaacgtggttcgtttgcttggcttctgcgcagatgga |
8861931 |
T |
|
| Q |
124 |
atccatcgtgctcttgtatacaatttgtttccaaaaggttcactacaaagcttcatatttccgcctgataacaaggatcacttcatggggtgggagaagc |
223 |
Q |
| |
|
|| || || |||||||| |||||||| |||||||| ||||| |||||||||||||||||||| || ||||||||||| || ||||||||||||||||||| |
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| T |
8861930 |
attcaccgcgctcttgtctacaatttatttccaaatggttcgctacaaagcttcatatttccaccagataacaaggaccatttcatggggtgggagaagc |
8861831 |
T |
|
| Q |
224 |
tgcaacaaattagtcttggtatcgcaaaaggaatcgagtatcttcatgagggttgtagccatccaatcctgcactttgacattaaacctcacaatgtttt |
323 |
Q |
| |
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| ||||||||| || | || || || |||||||| |||||||| ||| ||||||| ||||||||| | ||||| ||||| || |||||||||||||| |
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| T |
8861830 |
tacaacaaattggtataggaattgccaaaggaattgagtatctacatctcggttgtaaccatccaataattcacttcgacatcaaccctcacaatgtttt |
8861731 |
T |
|
| Q |
324 |
gctagatga |
332 |
Q |
| |
|
||||||||| |
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| T |
8861730 |
gctagatga |
8861722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 13 - 332
Target Start/End: Complemental strand, 8979441 - 8979122
Alignment:
| Q |
13 |
attctcaacaatacacagggagaagggaaagagttcgtcactgaagtagaaattatgggaaaaatacaccatatcaacgtggttcggttgcttggatttt |
112 |
Q |
| |
|
||||||||||||||| | ||||| |||||||||||| | | ||||| | ||||||||||||||| ||||| ||||| || ||||| |||||||| || | |
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|
| T |
8979441 |
attctcaacaatacagaaggagacgggaaagagttcattagcgaagtgggaattatgggaaaaatccaccacatcaatgttgttcgattgcttggcttct |
8979342 |
T |
|
| Q |
113 |
gcgcagagggaatccatcgtgctcttgtatacaatttgtttccaaaaggttcactacaaagcttcatatttccgcctgataacaaggatcacttcatggg |
212 |
Q |
| |
|
| ||||||||||| ||||||| |||||| |||||||| ||| |||| ||||| ||||||| ||||||||||| || |||||| |||| ||||||||||| |
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| T |
8979341 |
gtgcagagggaattcatcgtgttcttgtctacaatttattttcaaagggttcgttacaaagtttcatatttcctccagataacgaggaccacttcatggg |
8979242 |
T |
|
| Q |
213 |
gtgggagaagctgcaacaaattagtcttggtatcgcaaaaggaatcgagtatcttcatgagggttgtagccatccaatcctgcactttgacattaaacct |
312 |
Q |
| |
|
|||||||| |||||| ||||| || |||| || || | |||||| |||||||||||| |||||||||| ||| ||||||| || |||||||| || ||| |
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|
| T |
8979241 |
gtgggagatgctgcagaaaattggtattggcatagccagaggaattgagtatcttcatcagggttgtagtcattcaatccttcattttgacatcaaccct |
8979142 |
T |
|
| Q |
313 |
cacaatgttttgctagatga |
332 |
Q |
| |
|
|||||||||||||| ||||| |
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|
| T |
8979141 |
cacaatgttttgctcgatga |
8979122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 249 - 332
Target Start/End: Complemental strand, 9106469 - 9106386
Alignment:
| Q |
249 |
aaaaggaatcgagtatcttcatgagggttgtagccatccaatcctgcactttgacattaaacctcacaatgttttgctagatga |
332 |
Q |
| |
|
||||||||| ||||||||||| || | ||||| ||||||||| || ||||||||||| || |||||||||||||||| |||||| |
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|
| T |
9106469 |
aaaaggaattgagtatcttcacgaagattgtatccatccaattcttcactttgacatcaaccctcacaatgttttgcaagatga |
9106386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 66 - 269
Target Start/End: Complemental strand, 9420873 - 9420670
Alignment:
| Q |
66 |
tatgggaaaaatacaccatatcaacgtggttcggttgcttggattttgcgcagagggaatccatcgtgctcttgtatacaatttgtttccaaaaggttca |
165 |
Q |
| |
|
|||||||||||| || || ||||| || ||||| ||| ||||||||||||| || ||| | | ||||||||||| || ||||| |||||||| ||||| |
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|
| T |
9420873 |
tatgggaaaaattcatcacatcaatgttgttcgcttggttggattttgcgccgatggatcctaccgtgctcttgtttataatttctttccaaatggttcg |
9420774 |
T |
|
| Q |
166 |
ctacaaagcttcatatttccgcctgataacaaggatcacttcatggggtgggagaagctgcaacaaattagtcttggtatcgcaaaaggaatcgagtatc |
265 |
Q |
| |
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|||| | ||||||| | |||||| | | ||| || || | || ||||||||||| ||||||||| |||||| || || ||||| || ||||||| |
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|
| T |
9420773 |
ttacagaacttcataacccgacctgatgatatggaccattttctcggatgggagaagctacaacaaattgctcttggcatagccaaaggtattgagtatc |
9420674 |
T |
|
| Q |
266 |
ttca |
269 |
Q |
| |
|
|||| |
|
|
| T |
9420673 |
ttca |
9420670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 66 - 269
Target Start/End: Complemental strand, 9437956 - 9437753
Alignment:
| Q |
66 |
tatgggaaaaatacaccatatcaacgtggttcggttgcttggattttgcgcagagggaatccatcgtgctcttgtatacaatttgtttccaaaaggttca |
165 |
Q |
| |
|
|||||||||||| || || ||||| || ||||| ||| ||||||||||||| || ||| | | ||||||||||| || ||||| |||||||| ||||| |
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|
| T |
9437956 |
tatgggaaaaattcatcacatcaatgttgttcgcttggttggattttgcgccgatggatcctaccgtgctcttgtttataatttctttccaaatggttcg |
9437857 |
T |
|
| Q |
166 |
ctacaaagcttcatatttccgcctgataacaaggatcacttcatggggtgggagaagctgcaacaaattagtcttggtatcgcaaaaggaatcgagtatc |
265 |
Q |
| |
|
|||| | ||||||| | |||||| | | ||| || || | || ||||||||||| ||||||||| |||||| || || ||||| || ||||||| |
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|
| T |
9437856 |
ttacagaacttcataacccgacctgatgatatggaccattttctcggatgggagaagctacaacaaattgctcttggcatagccaaaggtattgagtatc |
9437757 |
T |
|
| Q |
266 |
ttca |
269 |
Q |
| |
|
|||| |
|
|
| T |
9437756 |
ttca |
9437753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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