View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18958_low_21 (Length: 338)
Name: NF18958_low_21
Description: NF18958
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18958_low_21 |
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Alignment Details
Target: chr3 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 18 - 215
Target Start/End: Complemental strand, 29594659 - 29594462
Alignment:
| Q |
18 |
aattagtgtgattgaaaaagcttatcaaaaatcttacaaggtgttcaagatcaaactggtggtatattaatgttaatatctttgttattttagttttgtt |
117 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
29594659 |
aattagtgtgattgaaaaagcttataaaaaatcttacaaggtgttcaagatcaaactggtggtatattaacgttaatatctttgttattttagttttgtt |
29594560 |
T |
|
| Q |
118 |
tgtgttcattgggatttttatcatcagaagctcttgcaaaacttatacacatatcagataaccttcacgccaaattactggagaatgacaagaagaat |
215 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
29594559 |
tgtgttcattgggatttttatcattagaagctcttgcaaaacttatacacatatcagataaccttcacgccaaattactggagaatggcaagaagaat |
29594462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 178; Significance: 6e-96; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 18 - 215
Target Start/End: Complemental strand, 52077552 - 52077355
Alignment:
| Q |
18 |
aattagtgtgattgaaaaagcttatcaaaaatcttacaaggtgttcaagatcaaactggtggtatattaatgttaatatctttgttattttagttttgtt |
117 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52077552 |
aattagtgtgattgaaaaagcttatgaaaaatcttacaaggtgttcaagatcaaactggtggtatattaatgttaatatctttgttattttagttttgtt |
52077453 |
T |
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| Q |
118 |
tgtgttcattgggatttttatcatcagaagctcttgcaaaacttatacacatatcagataaccttcacgccaaattactggagaatgacaagaagaat |
215 |
Q |
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| T |
52077452 |
tgtgttcattgggatttttatcattagaagctcttgcaaaacttatacccatatcagataaccttcacgccaaattagtggagaatggcaagaagaat |
52077355 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 166; E-Value: 8e-89
Query Start/End: Original strand, 18 - 215
Target Start/End: Original strand, 29058719 - 29058916
Alignment:
| Q |
18 |
aattagtgtgattgaaaaagcttatcaaaaatcttacaaggtgttcaagatcaaactggtggtatattaatgttaatatctttgttattttagttttgtt |
117 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||| |
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| T |
29058719 |
aattagtgtgattgaaaaagcttatgaaaaatcttacaaggtgttcaagatcaaactagtggtatattgatgttaatatctttgttattttagttttgtt |
29058818 |
T |
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| Q |
118 |
tgtgttcattgggatttttatcatcagaagctcttgcaaaacttatacacatatcagataaccttcacgccaaattactggagaatgacaagaagaat |
215 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| |||||||||| |
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| T |
29058819 |
tgtgttcattgggatttttatcattagaagctcttgcaaaacttatacccatatcagataaccttcacttcaaattactggagaatggcaagaagaat |
29058916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 212 - 296
Target Start/End: Original strand, 29059084 - 29059168
Alignment:
| Q |
212 |
gaataaattaaatgatatatctatgattgtaacatcaactttcccatcataaaaaacaacccttctttcccatgctaaacttcac |
296 |
Q |
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| T |
29059084 |
gaataaattaaatgatatatctatggttgtaacatcaactttcccataatagaaaacaacgctcctttcatatgctaaacttcac |
29059168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 18 - 74
Target Start/End: Complemental strand, 52088354 - 52088298
Alignment:
| Q |
18 |
aattagtgtgattgaaaaagcttatcaaaaatcttacaaggtgttcaagatcaaact |
74 |
Q |
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| T |
52088354 |
aattagtgtgattgaaaaagcttatgaaaaatcttacaaggtgttcaagatcaaact |
52088298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 212 - 297
Target Start/End: Complemental strand, 52077187 - 52077102
Alignment:
| Q |
212 |
gaataaattaaatgatatatctatgattgtaacatcaactttcccatcataaaaaacaacccttctttcccatgctaaacttcacc |
297 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||| ||| ||| || |||||||||| |||||| |||| |
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| T |
52077187 |
gaataaattaaatgatatatctatggttgtaacatcaactttcccatcatgggaaataactctcctttcccatgttaaactccacc |
52077102 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 95; Significance: 2e-46; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 18 - 183
Target Start/End: Original strand, 51288628 - 51288793
Alignment:
| Q |
18 |
aattagtgtgattgaaaaagcttatcaaaaatcttacaaggtgttcaagatcaaactggtggtatattaatgttaatatctttgttattttagttttgtt |
117 |
Q |
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||||||||||||||||||||||||| |||||| |||||||||||| ||||||| || ||| | ||||| |||||| |||||||| ||||||||||||||| |
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| T |
51288628 |
aattagtgtgattgaaaaagcttatgaaaaattttacaaggtgttaaagatcacaccggtag-atattgatgttagtatctttgctattttagttttgtt |
51288726 |
T |
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| Q |
118 |
tgtgttcattggga-tttttatcatcagaagctcttgcaaaacttatacacatatcagataaccttc |
183 |
Q |
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|||||||| ||||| |||||||||| || ||||||||||||| |||||| ||||||||||||||||| |
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| T |
51288727 |
tgtgttcagtgggattttttatcattaggagctcttgcaaaatttatacccatatcagataaccttc |
51288793 |
T |
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