View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18958_low_23 (Length: 322)
Name: NF18958_low_23
Description: NF18958
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18958_low_23 |
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Alignment Details
Target: chr4 (Bit Score: 162; Significance: 2e-86; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 61 - 304
Target Start/End: Original strand, 31606058 - 31606325
Alignment:
| Q |
61 |
tttgcttcaatccaatgtgtcaaaattctaagccacttacaataaatcatcatattttataatctcat-----------ttttagtaagttggatcaaaa |
149 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
31606058 |
tttgcttcaatccaatgtgtcaaaattctaagccacctacaataaatcatcatattttataatctcattttatcgtcatttttagtaagttggatcaaaa |
31606157 |
T |
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| Q |
150 |
acatcattttcacccacttttaaattatcaaaattcacttttaaccaacaaaatttaaattgcttaatttccctccaagaaata-------------ttg |
236 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | |
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| T |
31606158 |
acatcattttcacccatttttaaattatcaaaattcacttttaaccaacaaaatttaaattgcttaatttccctccaagaaacatcattttcagacctat |
31606257 |
T |
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| Q |
237 |
ttttcagaaacaaacaaaatccaatttgaaatgaggcccaacttatgctcagcccaaccctctaaccc |
304 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
31606258 |
ttttcagaaacaaacaaaatccaatttgaaatgaggcccaacttatgctcagtccaaccctctaaccc |
31606325 |
T |
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Back To:
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Target: chr5 (Bit Score: 156; Significance: 7e-83; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 61 - 304
Target Start/End: Complemental strand, 12633078 - 12632810
Alignment:
| Q |
61 |
tttgcttcaatccaatgtgtcaaaattctaagccacttacaataaatcatcatattttataatctcatttt-----------tagtaagttggatcaaaa |
149 |
Q |
| |
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|||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||| |||||||||||||||||| |
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| T |
12633078 |
tttgcttcaatctaatgtgtcaaaattctaagccacctacaataaatcatcatatttcataatctcattttatcatcatttttagtaagttggatcaaaa |
12632979 |
T |
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| Q |
150 |
acatcattttcacccacttttaaattatcaaaattcacttttaaccaacaaaatttaaattgcttaatttccctccaagaaatat--------------t |
235 |
Q |
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| T |
12632978 |
acatcattttcacccatttttaaattatcaaaattcacttttaaccaacaaaatttaaattgctaaatttccctccaagaaacatcattttcagacctat |
12632879 |
T |
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| Q |
236 |
gttttcagaaacaaacaaaatccaatttgaaatgaggcccaacttatgctcagcccaaccctctaaccc |
304 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12632878 |
tttttcagaaacaaacaaaatccaatttgaaatgaggcccaacttatgctcagcccaaccctctaaccc |
12632810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 156; Significance: 7e-83; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 62 - 304
Target Start/End: Complemental strand, 45291699 - 45291442
Alignment:
| Q |
62 |
ttgcttcaatccaatgtgtcaaaattctaagccacttacaataaatcatcatattttataatctcatttt-----------tagtaagttggatcaaaaa |
150 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| || |||| |||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
45291699 |
ttgcttcaatccaatgtgtcaaaattctaagccatctataatatatcatcatattttataatctcattttatcatcatttttagtaagttggatcaaaaa |
45291600 |
T |
|
| Q |
151 |
catcattttcacccacttttaaattatcaaaattcacttttaaccaacaaaatttaaattgcttaatttccctcca------agaaatattgttttcaga |
244 |
Q |
| |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| |||||||| |
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| T |
45291599 |
tatcattttcacccatttttaaattatcaaaattcacttttaaccaacaaaatttaaattgcttaatttccctccaaaattcagacctat--ttttcaga |
45291502 |
T |
|
| Q |
245 |
aacaaacaaaatccaatttgaaatgaggcccaacttatgctcagcccaaccctctaaccc |
304 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45291501 |
aacaaacaaaatccaatttgaaatgaggcccaacttatgctcagcccaaccctctaaccc |
45291442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 56; Significance: 3e-23; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 68 - 131
Target Start/End: Original strand, 25571921 - 25571984
Alignment:
| Q |
68 |
caatccaatgtgtcaaaattctaagccacttacaataaatcatcatattttataatctcatttt |
131 |
Q |
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||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||| |
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| T |
25571921 |
caatccaatgtgtcaaaattctaagcctcctacaataaatcatcatattttataatctcatttt |
25571984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 68 - 131
Target Start/End: Original strand, 26006389 - 26006452
Alignment:
| Q |
68 |
caatccaatgtgtcaaaattctaagccacttacaataaatcatcatattttataatctcatttt |
131 |
Q |
| |
|
||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||| |
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| T |
26006389 |
caatccaatgtgtcaaaattctaagcctcctacaataaatcatcatattttataatctcatttt |
26006452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 68 - 131
Target Start/End: Original strand, 26125154 - 26125217
Alignment:
| Q |
68 |
caatccaatgtgtcaaaattctaagccacttacaataaatcatcatattttataatctcatttt |
131 |
Q |
| |
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||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||| |
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| T |
26125154 |
caatccaatgtgtcaaaattctaagcctcctacaataaatcatcatattttataatctcatttt |
26125217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 52; Significance: 8e-21; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 68 - 131
Target Start/End: Original strand, 45047748 - 45047811
Alignment:
| Q |
68 |
caatccaatgtgtcaaaattctaagccacttacaataaatcatcatattttataatctcatttt |
131 |
Q |
| |
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||||| ||||||||||||||||||||| | |||||||||||||||||||||||||||||||||| |
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| T |
45047748 |
caatctaatgtgtcaaaattctaagcctcctacaataaatcatcatattttataatctcatttt |
45047811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 52; Significance: 8e-21; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 68 - 131
Target Start/End: Original strand, 23362974 - 23363037
Alignment:
| Q |
68 |
caatccaatgtgtcaaaattctaagccacttacaataaatcatcatattttataatctcatttt |
131 |
Q |
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||||||||||||||||||||||||||| | |||||||||||||||| ||||||||||||||||| |
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| T |
23362974 |
caatccaatgtgtcaaaattctaagcctcctacaataaatcatcattttttataatctcatttt |
23363037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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