View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18958_low_26 (Length: 311)
Name: NF18958_low_26
Description: NF18958
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18958_low_26 |
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Alignment Details
Target: chr7 (Bit Score: 243; Significance: 1e-135; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 16 - 292
Target Start/End: Original strand, 32811950 - 32812222
Alignment:
| Q |
16 |
atagatagatattaaattccctggttgaaacgaaaatatattcaataatgtattaattgattcaaattaacattagttatacactagaaactaatgttat |
115 |
Q |
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| T |
32811950 |
atagatagatataaaat-ccctggttgaaacgaaaatatatt---taatgtattaattgattcaaattaactttagttatatactagaaactaatgttat |
32812045 |
T |
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| Q |
116 |
tactgatttgctttgataggtaacatccttcaagtgtggtggtttcgcatttggcatcacaagaagccatgcagccattgatgggcatagcctcaaaata |
215 |
Q |
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| T |
32812046 |
tactgatttgctttgataggtaacatccttcaagtgtggtggtttcgcatttggcatcacaagaagccatgcagccattgatgggcatagcctcaaaata |
32812145 |
T |
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| Q |
216 |
ttcttagacaaccttgctgcattggctgctaacatgccactgattatgacacccttcaatgacagacaactcttagc |
292 |
Q |
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| T |
32812146 |
ttcttagacaaccttgctgcattggctgctaacatgccactgattatgacacccttcaatgacagacaactcttagc |
32812222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 136 - 294
Target Start/End: Original strand, 32829599 - 32829757
Alignment:
| Q |
136 |
taacatccttcaagtgtggtggtttcgcatttggcatcacaagaagccatgcagccattgatgggcatagcctcaaaatattcttagacaaccttgctgc |
235 |
Q |
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|||||||||||||||||||||||||||| | ||| |||||| |||||||| | || ||||||| | |||| |||||| |||||||||||||||||| | |
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| T |
32829599 |
taacatccttcaagtgtggtggtttcgctataggcttcacaacaagccatgtaacctttgatggacttagcttcaaaaatttcttagacaaccttgcttc |
32829698 |
T |
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| Q |
236 |
attggctgctaacatgccactgattatgacacccttcaatgacagacaactcttagctg |
294 |
Q |
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| T |
32829699 |
attggctaccaacatgaaactgactgcgacacccttccatgacagacaactcctagctg |
32829757 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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