View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18958_low_3 (Length: 668)
Name: NF18958_low_3
Description: NF18958
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18958_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 600; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 600; E-Value: 0
Query Start/End: Original strand, 39 - 654
Target Start/End: Original strand, 44997172 - 44997787
Alignment:
| Q |
39 |
tgaccccatctggtcggatattattatgggtaaccacgtctatctatagccagttaaattagttcggtttgttttgaggcattccagtttcaaatcaaat |
138 |
Q |
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| T |
44997172 |
tgaccccatctggtcggatattattatgggtaaccacgtctatctatagccagttaaattagttcggtttgttttgaggcattccagtttcaaatcaaat |
44997271 |
T |
|
| Q |
139 |
acagttcttagtctcacacacaacaaaaggaactctccaacaagccctaaccagtcttgggaataacactatttccttatagttttggaaaaaccatgtc |
238 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44997272 |
acagttcttagtctcacacacaacaaaaggaagtctccaacaagccctaaccagtcttgggaataacactatttccttatagttttggaaaaaccatgtc |
44997371 |
T |
|
| Q |
239 |
aaacaaagggtagttttggaaaatcacgttatctttctttctccacagtaaatttaaccacatcctcaccacctttacgttttctatatctccacctaaa |
338 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
44997372 |
aaacaaagggtagttttggaaaatcacgttatctttctttctccacagtaaatttaaccacaccctcaccacctttacgttttctatatctccacctaaa |
44997471 |
T |
|
| Q |
339 |
cagtaccataaatcttccacttctcataattttccaaaacctaacaaacatacacaaagaagttaaaacagtttcattgcttactatggatcccgacgca |
438 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
44997472 |
cagtaccataaatcttccacttctcataattttccaaaacctaacaaacatacacaaagaagttaaaacagtttcattgcttaccatggatcccgacgca |
44997571 |
T |
|
| Q |
439 |
ttcaccgccagcctattcaagtgggacccacgtaccgtcctaccaacagctccacctctccgtccccaacttctcgactacgcagtcaccccatcaactg |
538 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44997572 |
ttcaccgccagcctattcaagtgggacccacgtaccgtcctaccaacagctccacctctccgtccccaacttctcgactacgcagtcaccccatcaactg |
44997671 |
T |
|
| Q |
539 |
ctccatcaccttattatccagctagattaccaagagaacttggaggtttggaggaacttttccaagcttatggaatcagatactacacggcggcgaagat |
638 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44997672 |
ctccatcaccttattatccagcgagattaccaagagaacttggaggtttggaggaacttttccaagcttatggaatcagatactacacggcggcgaagat |
44997771 |
T |
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| Q |
639 |
agcagagcttggtttt |
654 |
Q |
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|||||||||||||||| |
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| T |
44997772 |
agcagagcttggtttt |
44997787 |
T |
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