View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18958_low_31 (Length: 257)
Name: NF18958_low_31
Description: NF18958
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18958_low_31 |
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Alignment Details
Target: chr1 (Bit Score: 124; Significance: 7e-64; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 110 - 245
Target Start/End: Complemental strand, 45387711 - 45387576
Alignment:
| Q |
110 |
ctgcaaactgatattaggatgttatatatatgatcaattctataggcagcaccgcgcacaaacttatcaatggtggaaaaacaaactaatatattgtgca |
209 |
Q |
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| T |
45387711 |
ctgcaaactgatattaggatgttatatatatgatcaattctataggcagcaccacgcacaaacttatcagtggtggaaaaacaaactaatatattgtgca |
45387612 |
T |
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| Q |
210 |
aatgcgtaataattggttaattatcaaaataatatt |
245 |
Q |
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| T |
45387611 |
aatgcgtaataatttgttaattatcaaaataatatt |
45387576 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 45387820 - 45387764
Alignment:
| Q |
1 |
cagtatctcagcttcaccctgttccaattgtaaaagtctggtacaacagtcaaaggc |
57 |
Q |
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| T |
45387820 |
cagtatctcagcttcaccctgttccaattgtaaaagtctggtacaacagtcaaaggc |
45387764 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 45372153 - 45372109
Alignment:
| Q |
1 |
cagtatctcagcttcaccctgttccaattgtaaaagtctggtaca |
45 |
Q |
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| T |
45372153 |
cagtatctcagcttcaccctgttccaattgtaaaagtctggtaca |
45372109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 159 - 197
Target Start/End: Complemental strand, 45371549 - 45371511
Alignment:
| Q |
159 |
caccgcgcacaaacttatcaatggtggaaaaacaaacta |
197 |
Q |
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| T |
45371549 |
caccacgcacaaacttatcaatggtggaaaaacaaacta |
45371511 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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